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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT]
[+] EMBL BI505490 [GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAATAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTATTT]
consensusID : consensus_1072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence
[GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTT]
[+] EMBL BI511360 [GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACT TTAAAGCGTTCACGAACTATT AAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCG ]
[+] EMBL BI502839 [ GAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAACGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGGAAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTGATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAAAACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTGCATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCGAATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCTCGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAAATTATTGAAGATTCAACGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1072#0 -----GACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA 55
consensus_1072#1 GCTATGACGAGTGAGAGGAGGATATGTAGACGAGAAAAATAGGATGGCGTTTTAGGTAAA 60
*******************************************************
consensus_1072#0 CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGAT-----------GATAATTAATTGG 104
consensus_1072#1 CGCGACGGGATTTTCGAATTAATAAAAGTTAGCGATCGAGTAGCGGTGATAATTAATTGG 120
************************************ *************
consensus_1072#0 AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG 164
consensus_1072#1 AAACAGTTGATCATATCCCTCGTCAAATCCAATCTTTTTTGCTACAATTTCTCCTGTTTG 180
************************************************************
consensus_1072#0 ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA 224
consensus_1072#1 ATGTACACGTGATTCGCGTACGATAAACTTGTTAAAGCGTTCACGAACTATTAAAAAAAA 240
************************************************************
consensus_1072#0 AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG 284
consensus_1072#1 AACCTATACGAAGTGTAAACATTTTCTATAGCGTGTGTTGAGAAAGACTGCAACAATTTG 300
************************************************************
consensus_1072#0 CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG 344
consensus_1072#1 CATTTAAACATTGCAAATTGTTCCGGTAGTATCGTTATATTTTTTGCATTTCTATCTTCG 360
************************************************************
consensus_1072#0 AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT 404
consensus_1072#1 AATCGTGATCAATTTTTAAACGAGCATTGGTCATTCGAAAGGTTGTTAAAAATTATTTCT 420
************************************************************
consensus_1072#0 CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA 464
consensus_1072#1 CGAATATTTCTATTGAAGTTGTGTTCTGAAGTTTTCTAAATTTGAATTTTTAATATTTAA 480
************************************************************
consensus_1072#0 ATTATTGAAGATTCAACGTTTCTAATTTGTTGAGCGAGGTTAAATATTGGAGAAATGAAA 524
consensus_1072#1 ATTATTGAAGATTCAACGTTT--------------------------------------- 501
*********************
consensus_1072#0 TAAAAGAATAAAGTCGATATAATTATCAAAGACTCGAATATTCAGTGCTCGATTTTTTAT 584
consensus_1072#1 ------------------------------------------------------------
consensus_1072#0 TT 586
consensus_1072#1 --
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |