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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence
[GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG]
[+] EMBL BI512573 [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG]
[+] EMBL BI512464 [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTAT ]
consensusID : consensus_1108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACCGGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATTCACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT]
[+] EMBL BI502723 [ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACCGGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATTCACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1108#0 GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT 60
consensus_1108#1 ------------------------ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT 36
************************************
consensus_1108#0 GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG 120
consensus_1108#1 GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG 96
************************************************************
consensus_1108#0 GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT 180
consensus_1108#1 GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT 156
************************************************************
consensus_1108#0 TAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCG 240
consensus_1108#1 TAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAA--GGTAAGG 214
***************************** ** * * * **** **** *
consensus_1108#0 AAAAAGTAACCAGACCTCTGGTACTCGATGTGG--AAAGTATTACATATGAATATAAATC 298
consensus_1108#1 AGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGC 274
* *** * * ** * * **** *** ** * * * * *
consensus_1108#0 TCGTCGATAATACCT--TACCTACAGTTGGTCACAAA-AGTATTCTTCTTTTACCAACGG 355
consensus_1108#1 AAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAA 334
** ** * *** * ** * * ** * * * ** **
consensus_1108#0 AAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAAT 415
consensus_1108#1 GGCATGGT--GAACGTTGGTG-TCCAACCGGA--GTCGACATCATACGC-GCTGCGATTT 388
** * *** ** * * ** * * **** * ***** * *
consensus_1108#0 TAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAG 475
consensus_1108#1 CGGCCATACCAAAAATAGTCTG--CGAAACGATTCACGCCC-----TGGAGCTGCACGAT 441
* * * ** *** * ** *** ** ** * * * * * *
consensus_1108#0 GATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGA 535
consensus_1108#1 GAGACACCCTCGTGGAAGATCATGGACAAT------------------------------ 471
** * * * *** * ** ** *
consensus_1108#0 TAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG 574
consensus_1108#1 ---------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |