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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence
[AATTTGAAATATTTATTAGTTTTAGATAATATTGATAAAAAATTTATCTTAATTCAATTTCACTTATAATTTCACTTATAATTATAACTGGAATCATTTATATATATATATATGAATTTTCTATTTGCTTTATTCAAATTTTATTTTTAATAGTTTTTTAATGCA-GAATTTATATTGCAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAATGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTTCTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTTATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAAAAGCAGATCTCTTGCGTATTTCTTTTAGAGTCTTTCTGTTGGCTTGATAAGGTGTTAATGCTCTTCTAAGAGCTCTAGTTTTTTTTGGCCTTAAATCCAAAGGCTTATATTTATGATTTTTATACAACAAACGCAAATTTTCCTTTTGCTTTTGATGCATAATAATATATACCCTAGCTATTGCTTTCCTTACCACACGGATTTTCGAAAGTTTTGATGCAGCACCACCAGTAACTTTTGCCACTCGAAGATTTGTCAACTCAGTTTTGAGTTCTTCCAGTTGCTTGAGCAACTCATTTTTATCTTTTGTCCTCAGATCAGTACACTTAACCTTACCCATTTTGTTGTAATAC]
[+] EMBL BI515104 [AATTTGAAATATTTATTAGTTTTAGATAATATTGATAAAAAATTTATCTTAATTCAATTTCACTTATAATTTCACTTATAATTATAACTGGAATCATTTATATATATATATATGAATTTTCTATTTGCTTTATTCAAATTTTATTTTTAATAGTTTTTTAATGCATGAATTTATATTGCAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAATGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTTCTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTTATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAAAAGCAGATCTC ]
[-] EMBL BE844563 [ ATTTTTAATAGTTTTTTAATGCA GAATTTATATTGCAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAATGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTTCTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTTATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAAAAGCAGATCTCTTGCGTATTTCTTTTAGAGTCTTTCTGTTGGCTTGATAAGGTGTTAATGCTCTTCTAAGAGCTCTAGTTTTTTTTGGCCTTAAATCCAAAGGCTTATATTTATGATTTTTATACAACAAACGCAAATTTTCCTTTTGCTTTTGATGCATAATAATATATACCCTAGCTATTGCTTTCCTTACCACACGGATTTTCGAAAGTTTTGATGCAGCACCACCAGTAACTTTTGCCACTCGAAGATTTGTCAACTCAGTTTTGAGTTCTTCCAGTTGCTTGAGCAACTCATTTTTATCTTTTGTCCTCAGATCAGTACACTTAACCTTACCCATTTTGTTGTAATAC]
consensusID : consensus_1166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[TTTTTTTTTTTTTATCATAATACGATTAAAAATATTTAATAATTTATGTAAACAGAATGATCTTTAAAAATAATCNNNTATATAACCTTACTTTTTAAGAACAAGAGATTTTTTCATTTTTATTGCAAATTTTTTTGTTTGATTTATTATATGTTTTAATATATATATATATATATATGTATATATAGTGNNTGTGTGCGCGCGCGCGCGGTAAGGTTAAGTGTACTGATCTGAGGACAAAAGATAAAAATGAGTTGCTCAAGCAACTGGA]
[+] EMBL BI512393 [TTTTTTTTTTTTTATCATAATACGATTAAAAATATTTAATAATTTATGTAAACAGAATGATCTTTAAAAATAATCNNNTATATAACCTTACTTTTTAAGAACAAGAGATTTTTTCATTTTTATTGCAAATTTTTTTGTTTGATTTATTATATGTTTTAATATATATATATATATATATGTATATATAGTGNNTGTGTGCGCGCGCGCGCGGTAAGGTTAAGTGTACTGATCTGAGGACAAAAGATAAAAATGAGTTGCTCAAGCAACTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1166#0 AATTTGAAATATTTATTAGTTTTAGATAATATTGATAAAAAATTTATCTTAATTCAATTT 60
consensus_1166#1 ---------TTTTTTTTTTTTTATCATAATAC-GATTAAAAATATTTAATAATTTATGTA 50
* *** ** *** ****** *** ****** * * ***** * *
consensus_1166#0 CACTTA-TAAT-TTCACTTATAATTATAACTGGAATCAT-TTATATATATATATATGAAT 117
consensus_1166#1 AACAGAATGATCTTTAAAAATAATCNNNTATATAACCTTACTTTTTAAGAACAAGAGATT 110
** * * ** ** * ***** * ** * * * * ** * * ** *
consensus_1166#0 TTTCTATTTGCTTTATTCAAATTTTATTTTTAATAGTTTTTTAATGCAGAATTTATATTG 177
consensus_1166#1 TTTTCATTTTTATTGCAAATTTTTTTGTTTGATTTATTATATGTTTTAATATATATAT-- 168
*** **** ** * **** *** * * ** * * * * ** *****
consensus_1166#0 CAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAA 237
consensus_1166#1 --ATATATATATGTA---TATATAGTGNNTGTGTGCG-CGCGCGCG-CGGTAAGGTTAAG 221
** * * * * * ** * ** * * * * ****
consensus_1166#0 TGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTT 297
consensus_1166#1 TGTACTGATCTGAGG-ACAAAAGATAAAAATGAGTTGCTCAAGCAACTGGA--------- 271
** **** * * * **** * *** * * *
consensus_1166#0 CTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTT 357
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 ATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAA 417
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 AAGCAGATCTCTTGCGTATTTCTTTTAGAGTCTTTCTGTTGGCTTGATAAGGTGTTAATG 477
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 CTCTTCTAAGAGCTCTAGTTTTTTTTGGCCTTAAATCCAAAGGCTTATATTTATGATTTT 537
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 TATACAACAAACGCAAATTTTCCTTTTGCTTTTGATGCATAATAATATATACCCTAGCTA 597
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 TTGCTTTCCTTACCACACGGATTTTCGAAAGTTTTGATGCAGCACCACCAGTAACTTTTG 657
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 CCACTCGAAGATTTGTCAACTCAGTTTTGAGTTCTTCCAGTTGCTTGAGCAACTCATTTT 717
consensus_1166#1 ------------------------------------------------------------
consensus_1166#0 TATCTTTTGTCCTCAGATCAGTACACTTAACCTTACCCATTTTGTTGTAATAC 770
consensus_1166#1 -----------------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |