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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence
[CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTGGAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATAACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT]
[+] EMBL BI512999 [CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTGGAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATAACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTT ]
[+] EMBL BI514289 [ GAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCGGGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGTATATCTGGTGGCGTGGTTTCCACCTTGATGCTGCATCCGTTGGACTTGATCAAGACTAGATTCGCAGTTAGCGATGGCCACTCACGTGTGGGTCCACAATACAAGAGTCTTAAAAGCGCGGTTATGCAGATTGTTAAGACTGAAGGAGTGAGAGGACTTTACAGAGGTGTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAATACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCACATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT]
consensusID : consensus_1187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACACGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGTATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGTTTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAATTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGGGAATATATTTTCTTTGCAGCAGTTTCAAAA]
[+] EMBL BI516896 [GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACACGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGTATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGTTTTGTACCTGGAATGTTTGGCGTCTCACATGGTGCTATTCAATTTATGGTGTACGAAGAATTGAAGAATTGGTACAACAATTATTTGAATGTTCCGATTGATACGAAGCTGAGCACATGGGAATATATTTTCTTTGCAGCAGTTTCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1187#0 CGCGCTACCGTAAACGCAACAACACTGCCTGCCCCGGATCAAGAGATATGCCGCAGAGTG 60
consensus_1187#1 ------------------------------------------------------------
consensus_1187#0 GAGGCGAATATTGCTAGCGTTGTGAAGGATGCGACTGGATTTTCCGCTGACGGATCGATA 120
consensus_1187#1 ------------------------------------------------------------
consensus_1187#0 ACGAAGAACGAACAGCTTAACACGGGAAAAATGTCGGCAATGAAGTCTAGTGGTTCACCG 180
consensus_1187#1 ------------------------------------------------------------
consensus_1187#0 GGAACCGCTCGTGTTTTACCCGTGCTGAGCCACTTTAAATACGAACATTTCATCGCTGGT 240
consensus_1187#1 ------------------------------------------------------------
consensus_1187#0 ATATCTGGTGGCGTGGTTTCCACCTTG---ATGCTGCATCCGTTGGACTTGATCAAGAC- 296
consensus_1187#1 GCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGTAGTAAAGACA 60
* * * * * ** ** ** *** **** ** * * *****
consensus_1187#0 ----TAGATTCGCAGT-TAGCGATGGCCACTCACGTGTGGGTCCAC---AATACAAGAGT 348
consensus_1187#1 CGTTTGTGTCTACAATATATGGATGATAAGCATCTTCCGGAAACACTTAGATATAATGGT 120
* * ** * ** **** * * * ** *** *** ** **
consensus_1187#0 CTTAAAAGCGCGGTTATGCAGATTGTTAAGNCTGAAGGAGTGAGAGGACTTTACAGAGGT 408
consensus_1187#1 ATGATAGATGCAATTAAGAAGATTTATAGAACCGAAGGAGTTAGAGGCTTGTATCGAGGT 180
* * * ** *** * ***** ** * ******** ***** * ** *****
consensus_1187#0 GTAACGCCGAACGTTCTAGGATCTGGCGGTGCATGGGGTTGCTATTTCTTTTTTTACAAT 468
consensus_1187#1 TTTGTACCTGGAAT------GTTTGGCGTCTCACATGGT-GCTATTCAATTT------AT 227
* ** * * ***** ** *** ****** *** **
consensus_1187#0 ACCATTAAAACATGGATCCAAGGGGGAAATAGCAGAAAACCTTTGGGACCCTCGATGCAC 528
consensus_1187#1 GGTGT----ACGAAGAATTGAAGAATTGGTA-CAACAATTATTTGAATGTTCCGATTGAT 282
* ** ** * * ** ** ** **** **** *
consensus_1187#0 ATGTTCGCAGCAGCGGACGCTGGAATTCTTACTTTAGTTATGACAAATCCATTATGGGT 587
consensus_1187#1 A----CGAAGCTGAGCACATGGGAAT--ATATTTTCTTTGCAGCAGTTTCAAAA----- 330
* ** *** * * ** ***** ** *** ** ** * ** *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |