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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence
[TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTTTTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA]
[+] EMBL BI506845 [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGGTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATTTAGTGTAAGAGTTTTTTTGTTGAAACTATATATATTTATGTAAATAAAATAGTTAAATACTCAAAA]
[+] EMBL BI506556 [TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATCAGAAATAGCGATACCAACTTTACAAAAACTCGGAATTACTTATTACAATCCCCAAGTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAAGTATTACTGTTTGTAATCGATAATCAAACACGCAATAGTGCAGGCATCATTGAAGCAGCTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTATCCATATCGTCAAGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTGTGACCTGATGAATGGTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGATACCAATATTCGAAAGTGTATCTGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATCTGCATTCCGAAGATGGCATTAGACCAATTAAAATATCA ]
consensusID : consensus_1190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATTCAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGGAAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTTTATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT]
[+] EMBL BE844415 [CAGATCTCTCATTGTTGATTTTTCCAGAGAATCGCAGTTTGATTACCGCGTTTTTTTATTCAGATTTGAGACTTATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCACATATGTTTTTTATGCGTGGGCATGCAGCACCGAACTATCATCAAGGAAAATTCAAAATTCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAACTCATATTATTTTGTACAATGAAATCTTTCTGTATATCTGTTCAAGTTTATAACAACAGATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATACACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTATATAATGCTCCAAGAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAGAACAGCCGCTTCTATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1190#0 TATGAATGCTACTCATTTGTTACACTGTGATGGAAAAGATATTAACAATAAAAGTGCTTC 60
consensus_1190#1 -----------------------------------CAGAT-CTCTCATTGTTGATTTTTC 24
**** * ** * * ***
consensus_1190#0 AAGTAGAATGGCATGTGAGGTATTTCTGGGTGGATCTTGTAATCCAACCACATGGAGATC 120
consensus_1190#1 CAG-AGAATCGCAGTTTGATTACC-------GCGTTTTTTTATTCAG--ATTTGAGACTT 74
** ***** *** * ** * * ** * ** ** * ** *
consensus_1190#0 AGAAAT-AGCG-ATACCAACTTTACAAAAACTCGGAATTACTTATTACAA---TCCCCAA 175
consensus_1190#1 ATAAATGAATGCACATGAAATGCAGTCGAAATCAATGTTTTTCCCTTTGAAGTTTACCAC 134
* **** * * * * ** * * ** ** ** * * * * ***
consensus_1190#0 GTATCACAATGGGGACCAGAATTGATAGCGCAAGAATATGAAGCAAAACAAACGGCGAAA 235
consensus_1190#1 ATATGTTTTTTATGCGTGGGCATG-CAGCACCGAACTATCAT-CAAGGAAAATTCAAAAT 192
*** * * * ** *** * * *** * *** *** **
consensus_1190#0 GTATTACTGTTTG-TAATCGATAATCAAACACG-CAATAGTGCAGGCATCATTGAAGCAG 293
consensus_1190#1 TCTTCTCTGTTGAATGATTAAGAGATAAATATATCAAATAGGCATAGATTCTTTGCCTAA 252
* ***** * ** * * *** * *** *** ** ** *
consensus_1190#0 CTCAGTTGGCAGCTACGCGCCGCGAATCTTTAATCCTTGTTATTTA--TCCATATCGTCA 351
consensus_1190#1 CTCATATTATT-TTGTACAATG-AAATCTTTCTGTATATCTGTTCAAGTTTATAACAACA 310
**** * * * * ******* * * ** * * *** * **
consensus_1190#0 AGGTCAAACGATACTTGGCGAAACTGTATCTATTCAAGAATATTG-TGACCTGATGAATG 410
consensus_1190#1 GATATCGACAAAATCTATGGAAAAAAAACATACGTAATGTTGTCACTTGTATACTGGATA 370
** * * * **** * ** ** * * * * ** **
consensus_1190#0 -GTTTGCTAGTACTTCAGTATCTAATGGAGAAACAGAGGAT-ACCAATATTCGAAAGTGT 468
consensus_1190#1 CACATACACAAAGAGTGGCGACTTACTAAAAATTATCTGATTATTGGTCCTCATGCTTAT 430
* * * * ** * * ** * *** * * ** * *
consensus_1190#0 ATC-TGTTGCACTGAATTGTACATCTAAGNTGCTACGTGAGGAAATTAATGTGCAAGATC 527
consensus_1190#1 ATAATGCTCCAA-GAATTTTATATTTTTATCATTGAATTGGCACGTTTGTGCAAAAAAAG 489
** ** * ** ***** ** ** * * * * * ** ** ** *
consensus_1190#0 TGCATTCCGAAGATGGCATTAGNCCAATTAAAATATCATTCAATCAAAATGGAATAGATT 587
consensus_1190#1 AACAGCC----GCTTCTATGAATGCTACTCATTTGTTACACTGTGATGG-AAAAGATATT 544
** * * * ** * * * * * * * * * * * ** * ***
consensus_1190#0 TAGTGTAAGAGTTTTTTTGTTGAAACTATATAT-ATTTATGTAAATAAAATAGTTAAATA 646
consensus_1190#1 AACAATAAAAGTGCTTCAAGTAGAATGGCATGTGAGGTATT------------------- 585
* *** *** ** * ** ** * * ***
consensus_1190#0 CTCAAAA 653
consensus_1190#1 -------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |