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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACTTTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTACGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTCATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGAGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAAATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAGGCTCATGTGATGTATTCACCGAA]
[+] EMBL BI507728 [ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACTTTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTACGATGACTTTCAAAAGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTTCATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGGAGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACAAATAGCGAGTACGTTTTTACTAATAAAATTATGACTTATCTCTTCGATTTTCCACATGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGTAGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAAAACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTCAGGAGGCTCATGTGATGTATTCACCGAA]
consensusID : consensus_1263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTCGACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACATTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATATGATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAAGTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCACAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTAT]
[+] EMBL BI510509 [AGTCAAAGAATTTTTGTGAATCGTAGTCTTCATTTAGAAAATATCAAGTTTTATGGCTTCGACATGGATTATACTTTGGCAGAATACAAATCACCAGAATACGAACAATTGGGTTTTACATTGTTAAAAGATCGTCTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCATTTGAATATGATCCTAGTTTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCTTAAAGTGGACGCTTATGGAAATATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAACATTCACAAGTATATGAGCTTTATCCGAATAAATTTTTACAATTAGATGAATCTAGAGTATATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1263#0 ATGTGCTCAATACACTATTCAATCTTCCCGAATCATATTTATTAGCATGTTTGATAGACT 60
consensus_1263#1 ------------------------------------------------------------
consensus_1263#0 TTTTTACAAATTCGCGGCAATACATACCAGACAGAACAGGGGTAAAAGAAGGAGAACTTA 120
consensus_1263#1 ----------------------------------------AGTCAAAGAATTTTTGTGAA 20
** ****** *
consensus_1263#0 CGATGACTTTCAAA-AGCATATTCCAAGATGTTCGAAACGCTGTAGATTGGATACATCTT 179
consensus_1263#1 TCGTAGTCTTCATTTAGAAAATATCAAG---TTTTATGGCTTCGACATGGATTATACTTT 77
* **** ** * ** **** ** * * * ** * ** * **
consensus_1263#0 CATGGTAATTTAAAAACAAAAACAATGGAAAATTTAGATCTATATGTGAAGAAAGACAGG 239
consensus_1263#1 GGCAGAATACAAATCACCAGAATA-CGAACAATTGGGTTTTACAT-TGTTAAAAGATCGT 135
* * ** ** * ** * * * **** * * ** ** ** ***** *
consensus_1263#0 AGACTACCAATGTTTCTTAATAGGATTAGAGAAAGCGGGGCAAAAATATTTCTCTTAACA 299
consensus_1263#1 ------CTAGTATCTCTGGGATATCCAGAAGAAATTAAAGCA----------TTTGAATA 179
* * * * *** ***** *** * * ** *
consensus_1263#0 AATAGCGAGTACGTTTTTACTAATAAAATTATGACTTA----TCTCTTCGATTTTCCACA 355
consensus_1263#1 TGATCCTAGT---TTTCCGGTACGAGGATTATGGTTTGATAGTCTTTATGGAAATCTTCT 236
* *** *** ** * ****** ** *** * * ** *
consensus_1263#0 TGGTGCAAAGCCTGATGAACCTCATAGAAATTGGAAAACATATTTTGATACTATAGTAGT 415
consensus_1263#1 TAAAGTGGACGCTTATGGAAAT-ATCTTAGTTTGCGTTCACGGTTTCGAATTTTTGAAAC 295
* * * ** *** * * ** * ** * ** *** * * * * *
consensus_1263#0 AGATGCTAGGAAACCACTATTTTTTGGTGAAGGTACAATTTTACGGCAAGTAGATACTAA 475
consensus_1263#1 ATTCACAAGTATATGAGCTTTATCCGA-----ATAAATTTTTA---CAATTAGATG---A 344
* * ** * * * ** * * ** * ***** *** ***** *
consensus_1263#0 AACTGGAGCTCTAAAACTTGGCACGCACAAAGGTCCACTTCATACAGGAGAAGTTTATTC 535
consensus_1263#1 ATCTAGAGTATATGTGCTCAATACACT-----ATTCAATCTTCCCGAATCATATTTAT-- 397
* ** *** ** ** * * ** * * * *****
consensus_1263#0 AGGAGGCTCATGTGATGTATTCACCGAA 563
consensus_1263#1 ----------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |