|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[ACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATTATGAATCGTTCATTGCTGCGAAACGTGAGGGAAAGATATCATCGGCTAAATTGTAAGGCGTTTGTAATATATACGAAGCATGTATAAGCTAATGTAATTGTAAATTGTTTGACGTGTTGCGTTTGCTTTGAATCGCTTTGAAAAAAAGGAAAAGTGTGAAATTTTGTGATAGACGGTAATAACTTTTTGAAAGCTCTCTTCTTGTATTCTAGCTTCTCGTTAATTATTATCGGTTTTCACAATATGCGGTTTTATTCATTCGTTGAACGTAAAAAATGAAAATATAATAAAAAAAAATAATAATTGTTGTTCGATACTCGCGCGAGCAATGTACGAGCCGGTGATGCTTTTGGGACACACGGTAGATGCAGAGGGATATAAAAAGCAAGAAATATATTCCATATTAGCGGATAATTAGATAAGTGGGACGGACAGGCATACGGATTAAAACAAAAAAAATTGCATAACTTGTATATTAGTGTATAGAACGTAGAAACGATGAAATAGCCACGAAAAGAATCATTTTCAACGA]
[+] EMBL BI507636 [ACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATTATGAATCGTTCATTGCTGCGAAACGTGAGGGAAAGATATCATCGGCTAAATTGTAAGGCGTTTGTAATATATACGAAGCATGTATAAGCTAATGTAATTGTAAATTGTTTGACGTGTTGCGTTTGCTTTGAATCGCTTTGAAAAAAAGGAAAAGTGTGAAATTTTGTGATAGACGGTAATAACTTTTTGAAAGCTCTCTTCTTGTATTCTAGCTTCTCGTTAATTATTATCGGTTTTCACAATATGCGGTTTTATTCATTCGTTGAACGTAAAAAATGAAAATATAATAAAAAAAAATAATAATTGTTGTTCGATACTCGCGCGAGCAATGTACGAGCCGGTGATGCTTTTGGGACACACGGTAGATGCAGAGGGATATAAAAAGCAAGAAATATATTCCATATTAGCGGATAATTAGATAAGTGGGACGGACAGGCATACGGATTAAAACAAAAAAAATTGCATAACTTGTATATTAGTGTATAGAACGTAGAAACGATGAAATAGCCACGAAAAGAATCATTTTCAACGA]
consensusID : consensus_1275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[AACGAGAATTAGAAAAATTGTTTCGCGACATCCTTGGTTCACCTGGTTGGAGTTGGCGCCCGTTCGGGTGAACGAACGGGTCGACGAGATACACGGCTCCACGTGAACCAAGGAGGAACGAAGAGGACGTAGTAGAGTAACATCCACGGGAATGGTGCGCCCTGATATTAAGACTGATGTACAGTAGCGCGCTATTCTCATTTCACAGAGATATTTCGTCATTTTCTCATCATTTCATCATCCCACGAGATACACGTAACACGTAACAATTCTCCTCGACACGGTCACACGAAGACAACCATTGGATTCGCAGGGCTAATTGAACATATATATATAAATATATATATATCGTATATATTTGTCAGATATATGTCATATATGTATGCGTACACTCGTTTGCCACGCCACTGGCTCTTACACTTGCACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATT]
[+] EMBL BI510324 [AACGAGAATTAGAAAAATTGTTTCGCGACATCCTTGGTTCACCTGGTTGGAGTTGGCGCCCGTTCGGGTGAACGAACGGGTCGACGAGATACACGGCTCCACGTGAACCAAGGAGGAACGAAGAGGACGTAGTAGAGTAACATCCACGGGAATGGTGCGCCCTGATATTAAGACTGATGTACAGTAGCGCGCTATTCTCATTTCACAGAGATATTTCGTCATTTTCTCATCATTTCATCATCCCACGAGATACACGTAACACGTAACAATTCTCCTCGACACGGTCACACGAAGACAACCATTGGATTCGCAGGGCTAATTGAACATATATATATAAATATATATATATCGTATATATTTGTCAGATATATGTCATATATGTATGCGTACACTCGTTTGCCACGCCACTGGCTCTTACACTTGCACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1275#0 ACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGT 60
consensus_1275#1 ------------------------------------------------------------
consensus_1275#0 GCGTGTACATTGTTGCGGATTATGAATCGTTCATTGCTGCGAAACGTGAGGGAAAGATAT 120
consensus_1275#1 ------------------------------------------AACGAGAATTAGAAAAAT 18
**** ** * * * **
consensus_1275#0 CATCGGCTAAATTGTAAGGCGTTTG--TAATATATACGAAGCATGTATAAGCTAATGTAA 178
consensus_1275#1 TGTT-------TCGCGACATCCTTGGTTCACCTGGTTGGAGTTGGCGCCCGTTCGGGTGA 71
* * * * *** * * * * ** * * * ** *
consensus_1275#0 TTGTAAATTGTTTGACGTGTTGCGTTTGCTTTGAATCGCTTTGAAAAAAAGGAAAAGTGT 238
consensus_1275#1 ACG--AACGGGTCGACGAGATACACG-GCTCCACGTGAACCAAGGAGGAACGAAGAGGAC 128
* ** * * **** * * * *** * * ** *** **
consensus_1275#0 GAAATTTTGTGATAG--ACGGTAATAA--CTTTTTGAAAGCTCTCTTCTTGTATTCTAGC 294
consensus_1275#1 GTAGTAGAGTAACATCCACGGGAATGGTGCGCCCTGATATTAAGACTGATGTACAGTAGC 188
* * * ** * * **** *** * *** * * **** ****
consensus_1275#0 TTCTCGTTAATTATTATCGGTTTTCACAATATGCGGTTTTATTCATTCGTTGAACGTAAA 354
consensus_1275#1 GC-------GCTATTCTCATTTCACA-GAGATATTTCGTCATTTTCTCATC-ATTTCATC 239
**** ** ** ** * ** * *** ** * * *
consensus_1275#0 AAATGAAAATATAATAAAAAAAAATAATAATTGTTGTTCGATAC--TCGCGCGAG--CAA 410
consensus_1275#1 ATCCCACGAGATACACGTAACACGTAACAATT-CTCCTCGACACGGTCACACGAAGACAA 298
* * * *** ** * *** **** * **** ** ** * *** ***
consensus_1275#0 TGTACGAGCCGGTGATGCTTTTGGGACACACG-GTAGATGCAGAGGGATATAAAAAGCAA 469
consensus_1275#1 CCATTGGATTCGCAGGGCTAATTGAACATATATATATAAATATATATATATCGTATATAT 358
* * *** * * *** * ** * * * **** * *
consensus_1275#0 G----AAATATATTCCATATTAGCGGATAATTAGATAAGTGGGACGG-ACAGGCATACGG 524
consensus_1275#1 TTGTCAGATATATGTCATATATGTATGCGTACACTCGTTTGCCACGCCACTGGCTCTTAC 418
* ****** ***** * * ** *** ** ***
consensus_1275#0 ATTAAAACAAAAAAAATTG-CATAACTTGTATATTAGTGTATAGAACGTAGAAACGATGA 583
consensus_1275#1 ACTTGCACGCGTCGAATTGTCATGTCACCCGTGTGACT-TTTATTATTCCGATATATTTA 477
* * ** ***** *** * * * * * * ** * ** * * *
consensus_1275#0 AATAGCCACGAAAAGAATCATTTTCAACGA 613
consensus_1275#1 ATCGCGTGCGTGTACA-TTGTTGCGGATT- 505
* ** * * * ** *
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |