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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CGTTTAGTTTCTGCTGCATCTCGGTATGTTAAAAAAAAGGATTCGCTATTATTTACGCTTGATACATTAAGTACTATACCTAGTATTCATACAACGCTACAAAAAATCAGTACCGCAGAATCAAAAAATTCTCTTTCGACTAGCAATTCGCACGAAACTGTACCTGAGCTAAATTATAATGCTTACATGGCAAAATATTTGGATAGTAATTGTTCACCTATATCGGAAGATAAAATTTTCATGTCTGGTGAAAGCACGCTTTGGATTAATTGTTTAATAGCTCGTATACTTTTCGATATACGCAAGTGTCCTGAAACTATACATCTTATACAGGATAAAATACAACGTAAATTATCCAATATAAAACTACCTTATTTTATGGAGTGCCTTTTAGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTAGATATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCAC]
[+] EMBL BI507236 [CGTTTAGTTTCTGCTGCATCTCGGTATGTTAAAAAAAAGGATTCGCTATTATTTACGCTTGATACATTAAGTACTATACCTAGTATTCATACAACGCTACAAAAAATCAGTACCGCAGAATCAAAAAATTCTCTTTCGACTAGCAATTCGCACGAAACTGTACCTGAGCTAAATTATAATGCTTACATGGCAAAATATTTGGATAGTAATTGTTCACCTATATCGGAAGATAAAATTTTCATGTCTGGTGAAAGCACGCTTTGGATTAATTGTTTAATAGCTCGTATACTTTTCGATATACGCAAGTGTCCTGAAACTATACATCTTATACAGGATAAAATACAACGTAAATTATCCAATATAAAACTACCTTATTTTATGGAGTGCCTTTTAGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTAGATATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCAC]
consensusID : consensus_1323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[AAGATTGGTATAGACGTTTAGTTTCTGCTGCATCTCGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTANNTATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCACCGATTTTTGATAGTGAACTAGAAGATACTCCGGAAACGTCTACAGAAGATGATTATGATACTTCCAAACCACAGTCGTATAACACGGTTAAAGAAACAACGTCTTCACAATCTTCCGGAAAGAAGTTCCTCAATATGGTGGATAGAATAGCAGCGAATAAATATTTTCAACATGCAACCGAGTTATCCTATGTTCGAAGAGCTATGGAAGGTGTTTCGAATATGGAGATTCGATTGATGGTTACTGTTTCAAGTATTGAAGGTTGTGTATCGATAAACATTCCACCGGCACCGTCCGATCGTTTGTGGTATGGTTTTAAACCCG]
[+] EMBL BI507438 [AAGATTGGTATAGACGTTTAGTTTCTGCTGCATCTCGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTANNTATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCACCGATTTTTGATAGTGAACTAGAAGATACTCCGGAAACGTCTACAGAAGATGATTATGATACTTCCAAACCACAGTCGTATAACACGGTTAAAGAAACAACGTCTTCACAATCTTCCGGAAAGAAGTTCCTCAATATGGTGGATAGAATAGCAGCGAATAAATATTTTCAACATGCAACCGAGTTATCCTATGTTCGAAGAGCTATGGAAGGTGTTTCGAATATGGAGATTCGATTGATGGTTACTGTTTCAAGTATTGAAGGTTGTGTATCGATAAACATTCCACCGGCACCGTCCGATCGTTTGTGGTATGGTTTTAAACCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1323#0 --------------CGTTTAGTTTCTGCTGCATCTCGGTATGTTAAAAAAAAGGATTCGC 46
consensus_1323#1 AAGATTGGTATAGACGTTTAGTTTCTGCTGCATCTCGTT---TCAGAGATAACAATAGGA 57
*********************** * * * * * ** ** *
consensus_1323#0 TATTATTTACGCTTGATACATTAAGTACTATACCTAGT-ATTCATACAACGCTACAAAAA 105
consensus_1323#1 CAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGG 117
* * * ** *** * ** * * * * * *** * ** *
consensus_1323#0 ATCAGTAC-CGCAGAATCAAAAAATTCTCTTTCGAC-TAGCAATTCGCACGAAACTGTAC 163
consensus_1323#1 CTTAATTTANNTATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAAT 177
* * * * ** * *** ***** * * * ** ** *** ** *
consensus_1323#0 CTGAGCTAAATTATAATGCTTACATGGCAAAATATTTGGATAGTAATTGTTCACCTATAT 223
consensus_1323#1 TTAATGAAATTAACAAGAACTGGATCGGT-----TCCGGATGATACGCGTATAATTATTT 232
* * ** * * ** * ** * * **** ** ** * *** *
consensus_1323#0 CGGAAGATAAAATTTTCATGTCTGGTGAAAGCACGCTTTGGATTAATTGTTTAATAGCTC 283
consensus_1323#1 CAACAAAAACAAAGGAATTGGCAACTAAATCACCGATTTTTGATAGTGAACTAGAAGATA 292
* * * * ** ** * * ** ** *** ** * ** ** *
consensus_1323#0 GTATACTTTTCGATATACGCAAGTGTCCTGAAACTATACATCTTATACAGGATAAAATAC 343
consensus_1323#1 CTCCGGAAACGTCTACAGAAGATGATTATGATACT-TCCAAACCACAGTCG-TATAACAC 350
* ** * * * *** *** * ** * * * ** ** **
consensus_1323#0 AACGTAAATTATCCAATATAAAACTACCTTATTTTATGGAGTGCCTTTTAGTTTCAGAGA 403
consensus_1323#1 GGT-TAAAGAAACAACGTCTTCACAATCTTCCGGAAAGAAGTTCCTC--AATATGGTGGA 407
**** * * * ** * *** * * *** *** * * * **
consensus_1323#0 TAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAA 463
consensus_1323#1 TAG-AATAG--CAGCGAATAAATATT-TTCAACATGCAACCGAGTTATCCTATGTTCGAA 463
** ***** ** ** **** **** ** *** * * * **
consensus_1323#0 GAGGTCTGTGGCTTAATTTAGATATAACGTATAAAGGATCTTTGACCATGACTGTTGAAA 523
consensus_1323#1 GAGCTATGGAAGGTGTTTCGAATATGGAGATTCGA------TTGATGGTTACTGTTTCA- 516
*** * ** * ** **** * * * **** * ****** *
consensus_1323#0 CAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAA 583
consensus_1323#1 -AGTATTGAAGGTTGTGTA-TCGATAAACATTCCACCGGCACCGTCCGAT-CGTTTGTGG 573
* ****** * ** * * * ** * * * *** *** *** ** * *
consensus_1323#0 TTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCAC 622
consensus_1323#1 T-ATGGTTTTAAACCCG---------------------- 589
* ** *** *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |