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Apis mellifera
cluster # 1388 cluster # 1388       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1388#0 length = 425 sequences # 1  
 consensus_1388#1 length = 288 sequences # 1  
consensusID : consensus_1388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence 
                              [CGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATTCGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGAGGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCAGTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCGGTTACCCCCGGCCCGGCCTGATGCGCGCCGCCCCAATCGCGACGATTCCTTCGTCACGATCGCTCCCAAGGTCGATCATCCAGTGATCGCGTGATTTAGTCCTCCTCCCGCCCCCCCTCTGCCGGAGGACGTGCCAGTTAAGGCTCGGTCATTAAGGAGAGATATACATAGATCGGCCGGGCACGATGACGACCATACCGATACTCAACAT]

[+] EMBL BI511684             [CGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATTCGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGAGGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCAGTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCGGTTACCCCCGGCCCGGCCTGATGCGCGCCGCCCCAATCGCGACGATTCCTTCGTCACGATCGCTCCCAAGGTCGATCATCCAGTGATCGCGTGATTTAGTCCTCCTCCCGCCCCCCCTCTGCCGGAGGACGTGCCAGTTAAGGCTCGGTCATTAAGGAGAGATATACATAGATCGGCCGGGCACGATGACGACCATACCGATACTCAACAT]




>consensus_1388#0
CGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATTCGGCTGAAAAGGTGGAGGGCCCGGGG
ACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGAGGGCCGAGGTCGGACCGGACGTCGCC
TCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCAGTTTGGCGGGTCCCCAACGCCTCGCC
ACTTCCCTCAGGCAGAAATTCGCCAATAACTCCGGTTACCCCCGGCCCGGCCTGATGCGC
GCCGCCCCAATCGCGACGATTCCTTCGTCACGATCGCTCCCAAGGTCGATCATCCAGTGA
TCGCGTGATTTAGTCCTCCTCCCGCCCCCCCTCTGCCGGAGGACGTGCCAGTTAAGGCTC
GGTCATTAAGGAGAGATATACATAGATCGGCCGGGCACGATGACGACCATACCGATACTC
AACAT

consensusID : consensus_1388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence 
                              [GAGACACGCCGAGACGCCCCTGCCATCGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATTCGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGAGGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCAGTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCGAGGGATGGCGGGATTCGGTGTTGGGGGCCTCGCGTCGTTTATTGGTGA]

[+] EMBL BI506704             [GAGACACGCCGAGACGCCCCTGCCATCGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATTCGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGAGGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCAGTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCGAGGGATGGCGGGATTCGGTGTTGGGGGCCTCGCGTCGTTTATTGGTGA]




>consensus_1388#1
GAGACACGCCGAGACGCCCCTGCCATCGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATT
CGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGA
GGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCA
GTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCG
AGGGATGGCGGGATTCGGTGTTGGGGGCCTCGCGTCGTTTATTGGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1388#0      --------------------------CGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATT 34
consensus_1388#1      GAGACACGCCGAGACGCCCCTGCCATCGGGAGCCCTTCGGTCTCAGCTCGGTTAGAAATT 60
                                                **********************************

consensus_1388#0      CGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGA 94
consensus_1388#1      CGGCTGAAAAGGTGGAGGGCCCGGGGACGCAAGAAGCTAAGGAGTCGGTGAACGGCTCGA 120
                      ************************************************************

consensus_1388#0      GGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCA 154
consensus_1388#1      GGGCCGAGGTCGGACCGGACGTCGCCTCCAAACTGAGCAGTTTGTTCGCCGGACTTCCCA 180
                      ************************************************************

consensus_1388#0      GTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCG 214
consensus_1388#1      GTTTGGCGGGTCCCCAACGCCTCGCCACTTCCCTCAGGCAGAAATTCGCCAATAACTCCG 240
                      ************************************************************

consensus_1388#0      GTTACCCCCGGCCCGGCCTGATGCGCGCCGCCCCAATCGCGACGATTCCTTCGTCACGAT 274
consensus_1388#1      AGGGATGGCGG---GATTCGGTGTTGGGGGCC----TCGCGTCG-TTTATTGGTGA---- 288
                              ***   *    * **   *  ***    ***** ** **  ** ** *    

consensus_1388#0      CGCTCCCAAGGTCGATCATCCAGTGATCGCGTGATTTAGTCCTCCTCCCGCCCCCCCTCT 334
consensus_1388#1      ------------------------------------------------------------
                                                                                  

consensus_1388#0      GCCGGAGGACGTGCCAGTTAAGGCTCGGTCATTAAGGAGAGATATACATAGATCGGCCGG 394
consensus_1388#1      ------------------------------------------------------------
                                                                                  

consensus_1388#0      GCACGATGACGACCATACCGATACTCAACAT 425
consensus_1388#1      -------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)