cluster # 1422

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Apis mellifera
cluster # 1422 cluster # 1422 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1422#0 length = 586 sequences # 1

consensus_1422#1 length = 379 sequences # 1

consensusID : consensus_1422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [GCGAAATTTTATTGATAAGATACCGCTTACCACTAAATTTAATACACATCACATAATTTCCTTATTGTAATGTGACTGTTAGGAATATATACAAAAAGCCATTATAGAGAATTCCTTGATATAAGATGATACATCAAAAAATGTATAGAATTCATTTAAGGTACGTATGAAGACATCCTATTTCTCTAAATGCGAATGGTGTTTTTTCAGATGACAAGTGTACAATCAAAATTACGTATAACTAATGTACACAGATTGGTTCCATTAAGTAAATCATGTACAATTATTTAATTATACTTAAGCCGATTGTTAATTACATTCACTTCTTTTGTTTCGCTGTCCCTCATTTTACAAGATCTAAAGAATTTCACTTATCCATAATACGATGTACATGTTAATTACAAGTAGTAATGTCAAAAAAATCNNNGTTTCTTAAAAAGAAAGGCATGAAAAATTGGCTTCTTAAATATATTTAGTCGTAGAAAAAAAGNNNCAAAAAGAGGAAAGAAATAATAAGCAACGAGTTATATATGTGACGTTACCAAATGGTGTAATTATCGCATTATCGAATTTTTTCAAGAACGCT]

[+] EMBL BI506477             [GCGAAATTTTATTGATAAGATACCGCTTACCACTAAATTTAATACACATCACATAATTTCCTTATTGTAATGTGACTGTTAGGAATATATACAAAAAGCCATTATAGAGAATTCCTTGATATAAGATGATACATCAAAAAATGTATAGAATTCATTTAAGGTACGTATGAAGACATCCTATTTCTCTAAATGCGAATGGTGTTTTTTCAGATGACAAGTGTACAATCAAAATTACGTATAACTAATGTACACAGATTGGTTCCATTAAGTAAATCATGTACAATTATTTAATTATACTTAAGCCGATTGTTAATTACATTCACTTCTTTTGTTTCGCTGTCCCTCATTTTACAAGATCTAAAGAATTTCACTTATCCATAATACGATGTACATGTTAATTACAAGTAGTAATGTCAAAAAAATCNNNGTTTCTTAAAAAGAAAGGCATGAAAAATTGGCTTCTTAAATATATTTAGTCGTAGAAAAAAAGNNNCAAAAAGAGGAAAGAAATAATAAGCAACGAGTTATATATGTGACGTTACCAAATGGTGTAATTATCGCATTATCGAATTTTTTCAAGAACGCT]




>consensus_1422#0
GCGAAATTTTATTGATAAGATACCGCTTACCACTAAATTTAATACACATCACATAATTTC
CTTATTGTAATGTGACTGTTAGGAATATATACAAAAAGCCATTATAGAGAATTCCTTGAT
ATAAGATGATACATCAAAAAATGTATAGAATTCATTTAAGGTACGTATGAAGACATCCTA
TTTCTCTAAATGCGAATGGTGTTTTTTCAGATGACAAGTGTACAATCAAAATTACGTATA
ACTAATGTACACAGATTGGTTCCATTAAGTAAATCATGTACAATTATTTAATTATACTTA
AGCCGATTGTTAATTACATTCACTTCTTTTGTTTCGCTGTCCCTCATTTTACAAGATCTA
AAGAATTTCACTTATCCATAATACGATGTACATGTTAATTACAAGTAGTAATGTCAAAAA
AATCNNNGTTTCTTAAAAAGAAAGGCATGAAAAATTGGCTTCTTAAATATATTTAGTCGT
AGAAAAAAAGNNNCAAAAAGAGGAAAGAAATAATAAGCAACGAGTTATATATGTGACGTT
ACCAAATGGTGTAATTATCGCATTATCGAATTTTTTCAAGAACGCT

consensusID : consensus_1422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [TACAATGTTGCTCTTTTTTTTTTTTTTCTTTTTCTTTTTCTCTTGAACCATGAAACTGACAGTGCAACAACACAACATTTTTGTAAGCGTTCTTGAAAAAATTCGATAATGCGATAATTACACCATTTGGTAACGTCACATATATAACTCGTTGCTTATTATTTCTTTTCTCTTTTTTTTCTTTTTCTCCTTTTGTTTAACGATTTCTTAATTATAGGCCTCTGGCAGAGGCGATTCTTGCGAATGCGTTCCACAGGCATCTAGGCACGACAGATATATAAAAGTAGTACGTTCAGGAATTTTTAGATTTATGACAATCCATTATTCTAAAATAGTGCTATCACGTTCATCTAAACTCTAAAACGACTTTTCACTTCTT]

[+] EMBL BI510537             [TACAATGTTGCTCTTTTTTTTTTTTTTCTTTTTCTTTTTCTCTTGAACCATGAAACTGACAGTGCAACAACACAACATTTTTGTAAGCGTTCTTGAAAAAATTCGATAATGCGATAATTACACCATTTGGTAACGTCACATATATAACTCGTTGCTTATTATTTCTTTTCTCTTTTTTTTCTTTTTCTCCTTTTGTTTAACGATTTCTTAATTATAGGCCTCTGGCAGAGGCGATTCTTGCGAATGCGTTCCACAGGCATCTAGGCACGACAGATATATAAAAGTAGTACGTTCAGGAATTTTTAGATTTATGACAATCCATTATTCTAAAATAGTGCTATCACGTTCATCTAAACTCTAAAACGACTTTTCACTTCTT]




>consensus_1422#1
TACAATGTTGCTCTTTTTTTTTTTTTTCTTTTTCTTTTTCTCTTGAACCATGAAACTGAC
AGTGCAACAACACAACATTTTTGTAAGCGTTCTTGAAAAAATTCGATAATGCGATAATTA
CACCATTTGGTAACGTCACATATATAACTCGTTGCTTATTATTTCTTTTCTCTTTTTTTT
CTTTTTCTCCTTTTGTTTAACGATTTCTTAATTATAGGCCTCTGGCAGAGGCGATTCTTG
CGAATGCGTTCCACAGGCATCTAGGCACGACAGATATATAAAAGTAGTACGTTCAGGAAT
TTTTAGATTTATGACAATCCATTATTCTAAAATAGTGCTATCACGTTCATCTAAACTCTA
AAACGACTTTTCACTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1422#0      GCGAAATTTTATTGATAAGATACCGCTTACCACTAAATTTAATACACATCACATAATTTC 60
consensus_1422#1      ------------------------------------------------------------
                                                                                  

consensus_1422#0      CTTATTGTAATGTGACTGTTAGGAATATATACAAAAAGCCATTATAGAGAATTCCTTGAT 120
consensus_1422#1      ------------------------------------------------------------
                                                                                  

consensus_1422#0      ATAAGATGATACATCAAAAAATGTATAGAATTCATTTAAGGTACGTATGAAGACATCCTA 180
consensus_1422#1      ---------------------------------------------TACAATGTTGCTCTT 15
                                                                   **  * *     ** 

consensus_1422#0      TTTCTCTAAATGCGAATGGTGTTTTTTCAGA--TGACAAGTGTACAAT----CAAAATTA 234
consensus_1422#1      TTTTTTTTTTTTCTTTTTCTTTTTCTCTTGAACCATGAAACTGACAGTGCAACAACACAA 75
                      *** * *   * *   *  * *** *   **      **    *** *    *** *  *

consensus_1422#0      CGTATAACTAA-TGTACACAGATTGGTTCCATTAAGTAAATCATGTACAATTATTTAATT 293
consensus_1422#1      CATTTTTGTAAGCGTTCTTGAAAAAATTCGATAATGCGATAATTACACCATTTGGTAACG 135
                      * * *   ***  ** *    *    *** ** * *  *    *  ** ***   ***  

consensus_1422#0      ATACTTAAGCCGATTGTTAATTACATTCACTTCTTTTGTTTCGCTGTCCCTCATTTTACA 353
consensus_1422#1      TCACATATATAACTCGTTGCTTA---TTATTTCTTTTCTCTTTTTTTTCTTTTTCTCCTT 192
                        ** **      * ***  ***   * * ******* * *   * * * *  * *    

consensus_1422#0      AGATCTAAAGAATTTCACTTATCCATAATACGATGTACATGTTAATTACAAGTAGTAATG 413
consensus_1422#1      TTGTTTAACGATTT---CTTAATTATAGGCCTCTGGCAGAGGCGATTCTTGCGAATGCGT 249
                         * *** ** **   ****   ***   *  **     *   ***      * *    

consensus_1422#0      TCAAAAAAATCNNNGTTTCTTAAAAAGAAAGGCATGAAAAATTGGCTTCTT-AAATATAT 472
consensus_1422#1      TCCA-------CAGGCATCTAGGCACGACAGATATATAAAAGTAGTACGTTCAGGAATTT 302
                      ** *          *  ***    * ** **  **  **** * *    ** *   ** *

consensus_1422#0      TTAGTCGTAGAAAAAAAGNNNCAAAAAGAGGAAAGAAATAATAAGCAACGAGTTATATAT 532
consensus_1422#1      TTAGATTTATGACAATCCATTATTCTAAAATAGTGCTATCACGTTCATCTAAACTCTAAA 362
                      ****   **  * **           * *  *  *  ** *    ** * *       * 

consensus_1422#0      GTGACGTTACCAAATGGTGTAATTATCGCATTATCGAATTTTTTCAAGAACGCT 586
consensus_1422#1      ACGAC-TTTTCACTTCTT------------------------------------ 379
                        *** **  **  *  *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)