cluster # 1502

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1502 cluster # 1502 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1502#0 length = 522 sequences # 1

consensus_1502#1 length = 437 sequences # 1

consensusID : consensus_1502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [TCATCGAACGACCAACGTGAAACGGCGTAAAAACCTAATAGCTAAAAGACGCATCATAAAAACGCATTTACACGTGTTTGTAACCATAATCGGTAAACTATCGCGTTTAACAAGTGTATCAACCGCGACACTCGACCACGTGGATCGAATTCTATCGAATACATTTGAATCGAGGCGAGACTTCCTCGTCTGCATCCAATTTCTGGCTCGTTTGTCGCGTGTTTTCGTTCTTCGTTTCTTTGAAAAAAAAAAAAAAAAAAGAAAACTCACAACAAAATAAAATCTAACCAGTTGTAACATAATCCTGTTCCTAGTCTTTTAAATATTTGTACCAAATAAATCTCAGAATCGATCGAACTTACAGTCTAACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATTNNNAATCGTAGTCCACAACCATCGTCCTCATTTCCGTATCTCGATGAAAATATATATATATATATATATGATACGACAAACTGTTACGATTAATATTTCGAACG]

[+] EMBL BI506013             [TCATCGAACGACCAACGTGAAACGGCGTAAAAACCTAATAGCTAAAAGACGCATCATAAAAACGCATTTACACGTGTTTGTAACCATAATCGGTAAACTATCGCGTTTAACAAGTGTATCAACCGCGACACTCGACCACGTGGATCGAATTCTATCGAATACATTTGAATCGAGGCGAGACTTCCTCGTCTGCATCCAATTTCTGGCTCGTTTGTCGCGTGTTTTCGTTCTTCGTTTCTTTGAAAAAAAAAAAAAAAAAAGAAAACTCACAACAAAATAAAATCTAACCAGTTGTAACATAATCCTGTTCCTAGTCTTTTAAATATTTGTACCAAATAAATCTCAGAATCGATCGAACTTACAGTCTAACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATTNNNAATCGTAGTCCACAACCATCGTCCTCATTTCCGTATCTCGATGAAAATATATATATATATATATATGATACGACAAACTGTTACGATTAATATTTCGAACG]




>consensus_1502#0
TCATCGAACGACCAACGTGAAACGGCGTAAAAACCTAATAGCTAAAAGACGCATCATAAA
AACGCATTTACACGTGTTTGTAACCATAATCGGTAAACTATCGCGTTTAACAAGTGTATC
AACCGCGACACTCGACCACGTGGATCGAATTCTATCGAATACATTTGAATCGAGGCGAGA
CTTCCTCGTCTGCATCCAATTTCTGGCTCGTTTGTCGCGTGTTTTCGTTCTTCGTTTCTT
TGAAAAAAAAAAAAAAAAAAGAAAACTCACAACAAAATAAAATCTAACCAGTTGTAACAT
AATCCTGTTCCTAGTCTTTTAAATATTTGTACCAAATAAATCTCAGAATCGATCGAACTT
ACAGTCTAACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATTNN
NAATCGTAGTCCACAACCATCGTCCTCATTTCCGTATCTCGATGAAAATATATATATATA
TATATATGATACGACAAACTGTTACGATTAATATTTCGAACG

consensusID : consensus_1502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [TTACAGTCTAACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATTGTAAATCGTAGTCCACAACCATCGTCCTCATTTCCGTATCTCGATGAAAATATATATATATATATATATATATATATATATATATATATATGATACGACAAACTGTTACGATTAATATTTCGAACGATGCTCGAATACTTTGCGGTTTCAAAGTTTAAATACAAACAGGAGAGGTACATGATCGAACATGATCGTCTCGACGTTTCGCTATATCTACATTGTAACTGACGGTGCATAGTGGTTGTAAACCGTTGCGGTTTACGAACAACGTTATATACACTCGATTATCGACGTTATTCGAGGCCGTGTGGACGTGATCGAAGATGATTCGACAATAAATAACATACTTGTTTATCACGGCATGACGGTCGTGCTCA]

[+] EMBL BI506708             [TTACAGTCTAACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATTGTAAATCGTAGTCCACAACCATCGTCCTCATTTCCGTATCTCGATGAAAATATATATATATATATATATATATATATATATATATATATATGATACGACAAACTGTTACGATTAATATTTCGAACGATGCTCGAATACTTTGCGGTTTCAAAGTTTAAATACAAACAGGAGAGGTACATGATCGAACATGATCGTCTCGACGTTTCGCTATATCTACATTGTAACTGACGGTGCATAGTGGTTGTAAACCGTTGCGGTTTACGAACAACGTTATATACACTCGATTATCGACGTTATTCGAGGCCGTGTGGACGTGATCGAAGATGATTCGACAATAAATAACATACTTGTTTATCACGGCATGACGGTCGTGCTCA]




>consensus_1502#1
TTACAGTCTAACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATT
GTAAATCGTAGTCCACAACCATCGTCCTCATTTCCGTATCTCGATGAAAATATATATATA
TATATATATATATATATATATATATATATATGATACGACAAACTGTTACGATTAATATTT
CGAACGATGCTCGAATACTTTGCGGTTTCAAAGTTTAAATACAAACAGGAGAGGTACATG
ATCGAACATGATCGTCTCGACGTTTCGCTATATCTACATTGTAACTGACGGTGCATAGTG
GTTGTAAACCGTTGCGGTTTACGAACAACGTTATATACACTCGATTATCGACGTTATTCG
AGGCCGTGTGGACGTGATCGAAGATGATTCGACAATAAATAACATACTTGTTTATCACGG
CATGACGGTCGTGCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1502#0      TCATCGAACGACCAACGTGAAACGGCGTAAAAACCTAATAGCTAAAAGACGCATCATAAA 60
consensus_1502#1      -----------TTACAGTCTAACGA-GTTGAATTTTCTCATTCAGGAACATCGGTATCGA 48
                                   *  **  ****  **  **   *   *   *  *    *   **  *

consensus_1502#0      AACGCATTTACACGTGTTTGTAACCATAATCGGTAAACTATCGCGTTTAACAA-GTGTAT 119
consensus_1502#1      TA-GCACTTCATTGTA-----AATCGTAGTCCACAA-CCATCGTCCTCATTTCCGTATCT 101
                       * *** **    **      ** * ** **   ** * ****   * *     ** * *

consensus_1502#0      CAACCGCGACACTCGACCACGTGGATCGAATTCTATCGAATACATTTGAATCGAGGCGAG 179
consensus_1502#1      CGATGAAAATATATATATATATATATATATATATAT-ATATATATATATAT-GATACGAC 159
                      * *     * *       *  *  **  *  * ***   *** ** *  ** **  *** 

consensus_1502#0      ACTTCCTCGTCTGCATCCAATTTCTGGCTCGTTTGTCGCGTGTTTTCGTTCTTCGTTTCT 239
consensus_1502#1      AAACTGT----TACGATTAATATTTCGAACG--------ATGCTCGAATACTTTGCGGTT 207
                      *     *    * *    *** * * *  **         ** *    * *** *    *

consensus_1502#0      TTGAAAAAAAAAAAAAAAAAAGAAAACTCACAACAAAATAAAATCTAACCAGTTGTAACA 299
consensus_1502#1      TCAAAGTTTAAATACAAACAGGAGAGGT----ACATGATCGAACATGATC-GTCTCGACG 262
                      *  **    *** * *** * ** *  *    ***  **  **  * * * **    ** 

consensus_1502#0      TAATCCTGTTCCTAGTCTTTTAAATATTTGTACCAAATAAATCTCAGAATCGATCGAACT 359
consensus_1502#1      TTTCGCTATATCTA-CATTGTAACTGACGGTGCATAGTGGTTGT--AAACCGTTGCGGTT 319
                      *    ** *  ***   ** *** *    ** *  * *   * *   ** ** *     *

consensus_1502#0      TACAGTCTA-ACGAGTTGAATTTTCTCATTCAGGAACATCGGTATCGATAGCACTTCATT 418
consensus_1502#1      TACGAACAACGTTATATACACTCGATTATCGACGTTATTCGAGGCCGTGTGGACGTGATC 379
                      ***   * *    *  *  * *   * **  * *    ***    **   * ** * ** 

consensus_1502#0      NNNAATCGTA-GTCCACAACCATCGTCCTCATTT-CCGTATCTCGATGAAAATATATATA 476
consensus_1502#1      GAAGATGATTCGACAATAAATAACATACTTGTTTATCACGGCATGACGGTCGTGCTCA-- 437
                          **  *  * * * **  * * * **  ***  *    *  ** *    *    *  

consensus_1502#0      TATATATATATGATACGACAAACTGTTACGATTAATATTTCGAACG 522
consensus_1502#1      ----------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)