cluster # 1552

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Apis mellifera
cluster # 1552 cluster # 1552 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1552#0 length = 456 sequences # 1

consensus_1552#1 length = 428 sequences # 1

consensusID : consensus_1552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [AGCCACGGAGCGTGTATAAGAGAGAGAATGTCGTTCACCCGCCTCGTCCAGGGAAAAAAAATTCAGAGAAAATTCAAATTCACGACAATTTCGATAAATTCGTTACATTATTTTCCCAGAGGAAGGTGATTCATAGTTTCCTCGTGTATCGATTTATCATACGCCGATCCGAGGCCGTGCGTGTGATATAGAGGAAATCGGTAATTTCCCTTTGCGTCGATTGTCGAAAATGGTGGAGCGAGCAAACAAACGACAAACGCGTGTCCGATCGATCGACGTTCCAAAGTCGAAACGCTTGGACGATCGGCGATCTCGAAGCTGTCGCTTGAGAGAGGGAATTTTCGCCACCTTTTGTCGCGATCTCGAAACGCCAGCCGAGATCGGACGCGACAGTTTCGAGATCGGCCACCCGAGTTATCCTCCTCCTCCCCCCTCCTTCCTCGCATTAGGGCTGCT]

[+] EMBL BI513273             [AGCCACGGAGCGTGTATAAGAGAGAGAATGTCGTTCACCCGCCTCGTCCAGGGAAAAAAAATTCAGAGAAAATTCAAATTCACGACAATTTCGATAAATTCGTTACATTATTTTCCCAGAGGAAGGTGATTCATAGTTTCCTCGTGTATCGATTTATCATACGCCGATCCGAGGCCGTGCGTGTGATATAGAGGAAATCGGTAATTTCCCTTTGCGTCGATTGTCGAAAATGGTGGAGCGAGCAAACAAACGACAAACGCGTGTCCGATCGATCGACGTTCCAAAGTCGAAACGCTTGGACGATCGGCGATCTCGAAGCTGTCGCTTGAGAGAGGGAATTTTCGCCACCTTTTGTCGCGATCTCGAAACGCCAGCCGAGATCGGACGCGACAGTTTCGAGATCGGCCACCCGAGTTATCCTCCTCCTCCCCCCTCCTTCCTCGCATTAGGGCTGCT]




>consensus_1552#0
AGCCACGGAGCGTGTATAAGAGAGAGAATGTCGTTCACCCGCCTCGTCCAGGGAAAAAAA
ATTCAGAGAAAATTCAAATTCACGACAATTTCGATAAATTCGTTACATTATTTTCCCAGA
GGAAGGTGATTCATAGTTTCCTCGTGTATCGATTTATCATACGCCGATCCGAGGCCGTGC
GTGTGATATAGAGGAAATCGGTAATTTCCCTTTGCGTCGATTGTCGAAAATGGTGGAGCG
AGCAAACAAACGACAAACGCGTGTCCGATCGATCGACGTTCCAAAGTCGAAACGCTTGGA
CGATCGGCGATCTCGAAGCTGTCGCTTGAGAGAGGGAATTTTCGCCACCTTTTGTCGCGA
TCTCGAAACGCCAGCCGAGATCGGACGCGACAGTTTCGAGATCGGCCACCCGAGTTATCC
TCCTCCTCCCCCCTCCTTCCTCGCATTAGGGCTGCT

consensusID : consensus_1552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [TGCATGTATATATATATAACAATCGTATTTCATCCGTTTACGGATAGAAATCTTGCCACGACGATCAATCGATCACGCGGAGGAGAAGGAGGAATCGCGACCACGTTTCTGTCTTAATTTCGAATCAGCCGCGAATCGAATTATTATTATTTTTCAGCCTACTTATTATTATTATAAGAAAAGGTACGTGGAGGATTTGATTGGTGCACGATCCGCGGTAAACGGAGATCCAATCAACGACACGAAACTTCTTTCGAAAGCTTCTCGGCGGGAAATTTGAAAAACGTTCGAAATCTCGACACGNNGATTATCTGAATTTCCACTGGTCGGACAGCAACTACTCGAGTATCGCCGTCTAATCCTACGTAATACCCTAATAGCAGCCCTAATGCGAGGAAGGAGGGGGGAGGAGGAGGATAACTCGGGTG]

[+] EMBL BI515156             [TGCATGTATATATATATAACAATCGTATTTCATCCGTTTACGGATAGAAATCTTGCCACGACGATCAATCGATCACGCGGAGGAGAAGGAGGAATCGCGACCACGTTTCTGTCTTAATTTCGAATCAGCCGCGAATCGAATTATTATTATTTTTCAGCCTACTTATTATTATTATAAGAAAAGGTACGTGGAGGATTTGATTGGTGCACGATCCGCGGTAAACGGAGATCCAATCAACGACACGAAACTTCTTTCGAAAGCTTCTCGGCGGGAAATTTGAAAAACGTTCGAAATCTCGACACGNNGATTATCTGAATTTCCACTGGTCGGACAGCAACTACTCGAGTATCGCCGTCTAATCCTACGTAATACCCTAATAGCAGCCCTAATGCGAGGAAGGAGGGGGGAGGAGGAGGATAACTCGGGTG]




>consensus_1552#1
TGCATGTATATATATATAACAATCGTATTTCATCCGTTTACGGATAGAAATCTTGCCACG
ACGATCAATCGATCACGCGGAGGAGAAGGAGGAATCGCGACCACGTTTCTGTCTTAATTT
CGAATCAGCCGCGAATCGAATTATTATTATTTTTCAGCCTACTTATTATTATTATAAGAA
AAGGTACGTGGAGGATTTGATTGGTGCACGATCCGCGGTAAACGGAGATCCAATCAACGA
CACGAAACTTCTTTCGAAAGCTTCTCGGCGGGAAATTTGAAAAACGTTCGAAATCTCGAC
ACGNNGATTATCTGAATTTCCACTGGTCGGACAGCAACTACTCGAGTATCGCCGTCTAAT
CCTACGTAATACCCTAATAGCAGCCCTAATGCGAGGAAGGAGGGGGGAGGAGGAGGATAA
CTCGGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1552#0      AGCCACGGAGCGTGTATAAGAGAGAGAAT-GTCGTTCACCCGCCTCGTCCAGGGAAAAAA 59
consensus_1552#1      ------TGCATGTATATATATATAACAATCGTATTTCATCCGTTTACGGATAGAAATCTT 54
                             *   ** ****      * *** **  **** ***  *       * **    

consensus_1552#0      AATTCAGAGAAAATTCAAATTCACGACAATTTCGATAAATTCGTTACATTATTTTCCCAG 119
consensus_1552#1      GCCACGACGATCAATCGATCACGCGGAGGAGAAGGAGGAATCGCGACCACGTTT-CTGTC 113
                          *   **  * ** *   * **        *    * ***  **    *** *    

consensus_1552#0      AGGAAGGTGATTCATAGTTTCCTCGTGTATCGATTTATCATACGCCGATCCGAGGCCGTG 179
consensus_1552#1      TTAATTTCGAATCAGCCGCGAATCGAATTATTATTATTTTTCAGCCTACTTATTATTAT- 172
                         *    ** ***        ***  *    ***  *  *  *** *          * 

consensus_1552#0      CGTGTGATATAGAGGAAATCGGTAATTTCCCTT-TGCGTCGATTGTCGAAAATGGTGGAG 238
consensus_1552#1      --TATAAGAAAAGGTACGTGGAGGATTTGATTGGTGCACGATCCGCGGTAAACGGAGATC 230
                        * * * * *  * *  * *   ****   *  ***       *  * *** ** *   

consensus_1552#0      CGAGCAAACAAACGA---------CAAACGCGTGTCCGA-------TCGATCGACGTTCC 282
consensus_1552#1      CAATCAACGACACGAAACTTCTTTCGAAAGCTTCTCGGCGGGAAATTTGAAAAACGTTCG 290
                      * * ***  * ****         * ** ** * ** *        * **   ****** 

consensus_1552#0      AAAGTCGAAACGCTTGGACGATCGGCGATCTCGAAGCTGTCGCTTGAGAGAGGGAATTTT 342
consensus_1552#1      AAA-TCTCGACACGNNGATTATCTGAATTTCCACTGGTCGGACAGCAACTACTCGAGTAT 349
                      *** **   ** *   **  *** *   *  *   * *    *   *   *    * * *

consensus_1552#0      CGCCACCT--TTTGTCGCGATCTCGAAACGCCAGCCGAGATC---GGACGCGACAGTTTC 397
consensus_1552#1      CGCCGTCTAATCCTACGTAATACCCTAATAGCAGCCCTAATGCGAGGAAGGAGGGGGGAG 409
                      ****  **  *    **  **  *  **   *****   **    *** *     *    

consensus_1552#0      GAGATCGGCCACCCGAGTTATCCTCCTCCTCCCCCCTCCTTCCTCGCATTAGGGCTGCT 456
consensus_1552#1      GAGGAGGATAACTCGGGTG---------------------------------------- 428
                      ***   *   ** ** **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)