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Apis mellifera
cluster # 1655 cluster # 1655       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1655#0 length = 497 sequences # 1  
 consensus_1655#1 length = 420 sequences # 1  
consensusID : consensus_1655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence 
                              [TATAGATTGACGAAATATCTGCTCGATGGATACGACGCCGGTGTACGTCCAGCCGAGAATTCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGACGAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCACCTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGCGTCTGGAGGCCGGACACGATCCTCTACAACAACGCCGATCCACAGTACAGCTCGGCAGTCATAAATACGAACGTGATAGTGAGTCACACGGGGGAGGTGGTGTGGTTGAGCCATGGGATATTTCGCAGCAGCTGCGACATCGACGTCGAGTTCTTCCCCTTCGACGAGCAACGCTGTGTGTTGAAATGGGCCTCCTGGACGTACGATGGATACCAATTGGAGTTGGAGAAGCAAAGCGAGCAAGGAGACGTGAGCAA]

[+] EMBL BI513319             [TATAGATTGACGAAATATCTGCTCGATGGATACGACGCCGGTGTACGTCCAGCCGAGAATTCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGACGAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCACCTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGCGTCTGGAGGCCGGACACGATCCTCTACAACAACGCCGATCCACAGTACAGCTCGGCAGTCATAAATACGAACGTGATAGTGAGTCACACGGGGGAGGTGGTGTGGTTGAGCCATGGGATATTTCGCAGCAGCTGCGACATCGACGTCGAGTTCTTCCCCTTCGACGAGCAACGCTGTGTGTTGAAATGGGCCTCCTGGACGTACGATGGATACCAATTGGAGTTGGAGAAGCAAAGCGAGCAAGGAGACGTGAGCAA]




>consensus_1655#0
TATAGATTGACGAAATATCTGCTCGATGGATACGACGCCGGTGTACGTCCAGCCGAGAAT
TCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGAC
GAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCAC
CTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGC
GTCTGGAGGCCGGACACGATCCTCTACAACAACGCCGATCCACAGTACAGCTCGGCAGTC
ATAAATACGAACGTGATAGTGAGTCACACGGGGGAGGTGGTGTGGTTGAGCCATGGGATA
TTTCGCAGCAGCTGCGACATCGACGTCGAGTTCTTCCCCTTCGACGAGCAACGCTGTGTG
TTGAAATGGGCCTCCTGGACGTACGATGGATACCAATTGGAGTTGGAGAAGCAAAGCGAG
CAAGGAGACGTGAGCAA

consensusID : consensus_1655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence 
                              [TGTACGTCCAGCCGAGAATTCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGACGAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCACCTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGCGTCTGGAGGCCGGACACGATCCTCTACAACAAGTAAGCGATGATTGTTTCGATAGAAAAGAGAAATTGTTGGAATATTGGCATCGTCGAAACGAGAATGGTAAAGGAGAGCTCGATATTTTCGGGTTACGTTCTATCATCAGGATAGAAGTTTCGATATCGATTACACCAGCGTTTCTTCCATGATCGGTTTTGTTCGTAGCGCCGATCCACAGTACAGCT]

[+] EMBL BI511141             [TGTACGTCCAGCCGAGAATTCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGACGAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCACCTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGCGTCTGGAGGCCGGACACGATCCTCTACAACAAGTAAGCGATGATTGTTTCGATAGAAAAGAGAAATTGTTGGAATATTGGCATCGTCGAAACGAGAATGGTAAAGGAGAGCTCGATATTTTCGGGTTACGTTCTATCATCAGGATAGAAGTTTCGATATCGATTACACCAGCGTTTCTTCCATGATCGGTTTTGTTCGTAGCGCCGATCCACAGTACAGCT]




>consensus_1655#1
TGTACGTCCAGCCGAGAATTCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCA
TCACATAATCGACGTGGACGAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACA
GATTTGGACGGACCATCACCTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGAT
TCGTGTTCCTTACAATCGCGTCTGGAGGCCGGACACGATCCTCTACAACAAGTAAGCGAT
GATTGTTTCGATAGAAAAGAGAAATTGTTGGAATATTGGCATCGTCGAAACGAGAATGGT
AAAGGAGAGCTCGATATTTTCGGGTTACGTTCTATCATCAGGATAGAAGTTTCGATATCG
ATTACACCAGCGTTTCTTCCATGATCGGTTTTGTTCGTAGCGCCGATCCACAGTACAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1655#0      TATAGATTGACGAAATATCTGCTCGATGGATACGACGCCGGTGTACGTCCAGCCGAGAAT 60
consensus_1655#1      -----------------------------------------TGTACGTCCAGCCGAGAAT 19
                                                               *******************

consensus_1655#0      TCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGAC 120
consensus_1655#1      TCCTCCCAACCCCTGGCGGTCGTCTTTGGCCTTTCTCTTCATCACATAATCGACGTGGAC 79
                      ************************************************************

consensus_1655#0      GAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCAC 180
consensus_1655#1      GAGAAGAATCAGATACTGACGACGAATTGCTGGGTGACACAGATTTGGACGGACCATCAC 139
                      ************************************************************

consensus_1655#0      CTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGC 240
consensus_1655#1      CTGAAATGGAACGCCTCGGAGTTCGCGGGGATCCGAGTGATTCGTGTTCCTTACAATCGC 199
                      ************************************************************

consensus_1655#0      GTCTGGAGGCCGGACACGATCCTCTACAACAACGCCGATCCACAGTACAGCTCGGCAGTC 300
consensus_1655#1      GTCTGGAGGCCGGACACGATCCTCTACAACAAG--TAAGCGATGAT-TGTTTCGATAGAA 256
                      ********************************     * * *   *     ***  **  

consensus_1655#0      ATAA-ATACGAACGTGATAGTGA-GTCACACGGGGGAGG-TGGTGTGGTTGAGCCATGGG 357
consensus_1655#1      AAGAGAAATTGTTGGAATATTGGCATCGTCGAAACGAGAATGGTAAAGGAGAGCT-CGAT 315
                      *  * * *     *  *** **   **        ***  ****   *  ****   *  

consensus_1655#0      ATATTTCGCAGCAGCTGCGACATCGACGTCGAGTTCTTCCCCTTCGACGAGCAACGCTGT 417
consensus_1655#1      ATTTTCGGGTTACGTTCTATCATCAGGATAGAAGT-TTCGATATCGATTA-CACCAGCGT 373
                      ** **  *     * *    ****    * **  * ***    ****  * ** *   **

consensus_1655#0      GTGTTGAAATGGGCCTCCTGGACGTACGATGGATACCAATTGGAGTTGGAGAAGCAAAGC 477
consensus_1655#1      TTCTTCCATGATCGGTTTTGTTCGTAGCGCCGATCCACAGTACAGCT------------- 420
                       * **  *       *  **  ****     *** *  * *  ** *             

consensus_1655#0      GAGCAAGGAGACGTGAGCAA 497
consensus_1655#1      --------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)