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Apis mellifera
cluster # 1758 cluster # 1758       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1758#0 length = 577 sequences # 1  
 consensus_1758#1 length = 514 sequences # 1  
consensusID : consensus_1758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence 
                              [TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGATCAAACCGGAAATTCGTGACTCTATGTGTTCTATATGATGACCAGAAATTCAATTGTGTCAATCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATAATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGAGAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTTTCGTTGCGCGATGCTATTTAGCGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATCAGTAACAATATATATGTATATATATAAACATATGTATATATATATATATGTATATATAGGGTATTGCTTCGATGGATGAATTTAAAATAAAAAGAAATAAAAAATGTAAACATACGTCAATATTTTCTTTGAATTTTTTTTTAATATATTTCATCTTATCTTCATAAAAGATGTTCCAAAAATAATATATCCGAAATTTGAAAATGTTTCATCATTG]

[+] EMBL BI509216             [TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGATCAAACCGGAAATTCGTGACTCTATGTGTTCTATATGATGACCAGAAATTCAATTGTGTCAATCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATAATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGAGAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTTTCGTTGCGCGATGCTATTTAGCGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATCAGTAACAATATATATGTATATATATAAACATATGTATATATATATATATGTATATATAGGGTATTGCTTCGATGGATGAATTTAAAATAAAAAGAAATAAAAAATGTAAACATACGTCAATATTTTCTTTGAATTTTTTTTTAATATATTTCATCTTATCTTCATAAAAGATGTTCCAAAAATAATATATCCGAAATTTGAAAATGTTTCATCATTG]




>consensus_1758#0
TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGA
TCAAACCGGAAATTCGTGACTCTATGTGTTCTATATGATGACCAGAAATTCAATTGTGTC
AATCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATA
ATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGA
GAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTT
TCGTTGCGCGATGCTATTTAGCGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATC
AGTAACAATATATATGTATATATATAAACATATGTATATATATATATATGTATATATAGG
GTATTGCTTCGATGGATGAATTTAAAATAAAAAGAAATAAAAAATGTAAACATACGTCAA
TATTTTCTTTGAATTTTTTTTTAATATATTTCATCTTATCTTCATAAAAGATGTTCCAAA
AATAATATATCCGAAATTTGAAAATGTTTCATCATTG

consensusID : consensus_1758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence 
                              [TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGATCAAACCGAAAATTCGTGACTCTATATTCTATATGATGACCAGAAATTCAATTGTGTCAACCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATAATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGAGAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTTTCGTTGCGCGATGCTATTTAACGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATCAGTAACAATATATATGTATATATATAAACATATGTATATATATATATTTATATACAGGGTATCGCTTCGATGGATGAATTTAAAATAAAAGAAATAAAAAATGTAAACATACGTCAATATTTTCTTTGAATTTGACAAATTTTTTTTTTAATATAT]

[+] EMBL BI516078             [TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGATCAAACCGAAAATTCGTGACTCTATATTCTATATGATGACCAGAAATTCAATTGTGTCAACCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATAATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGAGAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTTTCGTTGCGCGATGCTATTTAACGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATCAGTAACAATATATATGTATATATATAAACATATGTATATATATATATTTATATACAGGGTATCGCTTCGATGGATGAATTTAAAATAAAAGAAATAAAAAATGTAAACATACGTCAATATTTTCTTTGAATTTGACAAATTTTTTTTTTAATATAT]




>consensus_1758#1
TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGA
TCAAACCGAAAATTCGTGACTCTATATTCTATATGATGACCAGAAATTCAATTGTGTCAA
CCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATAAT
ATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGAGA
AAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTTTC
GTTGCGCGATGCTATTTAACGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATCAG
TAACAATATATATGTATATATATAAACATATGTATATATATATATTTATATACAGGGTAT
CGCTTCGATGGATGAATTTAAAATAAAAGAAATAAAAAATGTAAACATACGTCAATATTT
TCTTTGAATTTGACAAATTTTTTTTTTAATATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1758#0      TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGA 60
consensus_1758#1      TGGCCGCGAAACGAAGCTATAATCAGCCTTTAAACGTGTCGTGTATAGTTTCCGCCTCGA 60
                      ************************************************************

consensus_1758#0      TCAAACCGGAAATTCGTGACTCTATGTGTTCTATATGATGACCAGAAATTCAATTGTGTC 120
consensus_1758#1      TCAAACCGAAAATTCGTGACTCTATAT--TCTATATGATGACCAGAAATTCAATTGTGTC 118
                      ******** **************** *  *******************************

consensus_1758#0      AATCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATA 180
consensus_1758#1      AACCAATGACTGTAAATATATTACGTCGTGAACAAAAACAGTCTTAGCGGAAGGCGAATA 178
                      ** *********************************************************

consensus_1758#0      ATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGA 240
consensus_1758#1      ATATTCGCCATATTGCATTTTATTGTTACTAATAATTGGACGCGAGAAAATATTTAAGGA 238
                      ************************************************************

consensus_1758#0      GAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTT 300
consensus_1758#1      GAAAAATAAGAAATGGAAATAGCATGTACCTCGTTTTCCCTTCTTTGAACAAATTTCTTT 298
                      ************************************************************

consensus_1758#0      TCGTTGCGCGATGCTATTTAGCGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATC 360
consensus_1758#1      TCGTTGCGCGATGCTATTTAACGATACTGATCGTTGTATCGAATCGTTGTATCAGCAATC 358
                      ******************** ***************************************

consensus_1758#0      AGTAACAATATATATGTATATATATAAACATATGTATATATATATATATGTATATATAGG 420
consensus_1758#1      AGTAACAATATATATGTATATATATAAACATATGTATATATATATATTT--ATATACAGG 416
                      *********************************************** *  ***** ***

consensus_1758#0      GTATTGCTTCGATGGATGAATTTAAAATAAAAAGAAATAAAAAATGTAAACATACGTCAA 480
consensus_1758#1      GTATCGCTTCGATGGATGAATTTAAAATAAAA-GAAATAAAAAATGTAAACATACGTCAA 475
                      **** *************************** ***************************

consensus_1758#0      TATTTTCTTTGAATTTTTTTTTAATATATTTCATCTTATCTTCATAAAAGATGTTCCAAA 540
consensus_1758#1      TATTTTCTTTGAATTT------GACAAATTTTTTTTTTAATATAT--------------- 514
                      ****************       * * ****  * **   *  **               

consensus_1758#0      AATAATATATCCGAAATTTGAAAATGTTTCATCATTG 577
consensus_1758#1      -------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)