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Apis mellifera
cluster # 182 cluster # 182       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_182#0 length = 581 sequences # 3  
 consensus_182#1 length = 567 sequences # 3  
consensusID : consensus_182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 581
fasta sequence 
                              [GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGAAAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT]

[+] EMBL BI506598             [GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATA                                                                                                 ]
[+] EMBL BI503252             [         GCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGAAAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT]
[+] EMBL BI508309             [         GCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATTGATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGAAAAGTTAACGAATGAGAATAATCACGATACAGT        ]




>consensus_182#0
GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGA
CGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACG
ATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACA
CAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGT
AAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCC
CGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTT
TGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTGAT
TTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTATT
GATAATCAAAGAACGTCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATAGATGA
AAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT

consensusID : consensus_182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 567
fasta sequence 
                              [ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACTAATGGCAAGCAATATCCCAATAATGGC]

[-] EMBL BI506713             [ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGT                                                                    ]
[-] EMBL BI503965             [ CGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATNNNNGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACTAATGGCAAGCAAT              ]
[+] EMBL BI508878             [                                       TCAAATATATATATTTATATCGACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGACGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTGCCACCGAAGTTTGTGCTGCCAAACACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGTGTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATTCCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTGTTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGACGAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACTAATGGCAAGCAATATCCCAATAATGGC]




>consensus_182#1
ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATC
GACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGA
CGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAA
CACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGT
GTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATT
CCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTG
TTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATCATCCAGACGGTGAATCTGAC
GAGAGTTAGGATGCTCAGCTTGAAGATGAGGTATATATTCACGGTGACGGCAATCGCAGG
TACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTCTGTGGTTTTCTACT
AATGGCAAGCAATATCCCAATAATGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_182#0      --GCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATC 58
consensus_182#1      ACGCCGGTCAGGCTCGTACAATAATTTATCTTGATATCATCAAATATATATATTTATATC 60
                       **********************************************************

consensus_182#0      GACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGA 118
consensus_182#1      GACGCCTGTAGCCGTTCAATCATCCCAGGTGGGAAAACTCTCCTGATCAATGAACAGCGA 120
                     ************************************************************

consensus_182#0      CGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAA 178
consensus_182#1      CGATTGGCCAGAAATAACTGGCCTTTGACTCGGTGTACCACCGAAGTTTGTGCTGCCAAA 180
                     ************************************************************

consensus_182#0      CACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGT 238
consensus_182#1      CACAGGCTGCCCAAACGCATCAAGCTGCTGGCTCTCGTAGATACTACGATCGGTCGTCGT 240
                     ************************************************************

consensus_182#0      GTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATT 298
consensus_182#1      GTAAGACGGCTGTTGTTGTTGCTGCTGCTTTTGCGTATCTGTTACCGTCAGCTCGATATT 300
                     ************************************************************

consensus_182#0      CCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTG 358
consensus_182#1      CCCGGCTGAAACAGTCTCTTCCAAGTTGTCTGAAGCGTTTCTTTCCTCCAGAGTGCTGTG 360
                     ************************************************************

consensus_182#0      TTTGATACCGTAATAGAAGTACATGATGAAACCTATGATCGGATTGATACCATTAGATTG 418
consensus_182#1      TTTGATACCGTAATAGAAGTACATGATGAAACCGAGAATC--ATCCAGACGGTGAATCTG 418
                     ********************************* *  ***  **  * **  * *   **

consensus_182#0      ATTTTATCGATCGATGATAAAAATTGTTCAAGTTGGAAGAGAAAGAAACGTCGATAATTA 478
consensus_182#1      A----------CGAGAGTTAGGAT-GCTCAGCTTGAAGATGAGGTATATATTCACGGTGA 467
                     *          ***   * *  ** * ***  *** *   **   * *  *  *   * *

consensus_182#0      TTGATAATCAAAGA-ACG--TCGAGAAATTGGTGATCCAACAATCATGGTTAGAAAGATA 535
consensus_182#1      C-GGCAATCGCAGGTACGAATGGCAAACCTGGTGTCATGAACATCACACTGTTCCTGTTC 526
                       *  ****  **  ***  * *  **  *****     *  ****   *      * * 

consensus_182#0      GATGAAAAGTTAACGAATGAGAATAATCACGATACAGTGAGTATAT 581
consensus_182#1      TGTGGTTTTCTACTAATGGCAAGCAATATCCCAATAATGGC----- 567
                       **      **   *  *  *  ***  *   * * **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)