cluster # 1831

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Apis mellifera
cluster # 1831 cluster # 1831 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1831#0 length = 510 sequences # 1

consensus_1831#1 length = 442 sequences # 1

consensusID : consensus_1831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAATACTTACTTGTGTTTTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAATAAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCAGTCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTTCAACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTGCATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAACAGAATAATTAAAACTGTTAATAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCGCATTTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATTGTCAGGACATGTATTATTAATTTTAATATGCATTTTTTCATGAAAAAATGCTA]

[+] EMBL BI516275             [ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAATACTTACTTGTGTTTTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAATAAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCAGTCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTTCAACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTGCATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAACAGAATAATTAAAACTGTTAATAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCGCATTTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATTGTCAGGACATGTATTATTAATTTTAATATGCATTTTTTCATGAAAAAATGCTA]




>consensus_1831#0
ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAAT
ACTTACTTGTGTTTTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAAT
AAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCAG
TCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTTC
AACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTGC
ATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAACAGAATAATTAAAAC
TGTTAATAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCGCAT
TTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATTGTCAGGACATGTATTATTAATTT
TAATATGCATTTTTTCATGAAAAAATGCTA

consensusID : consensus_1831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CTATTATACAATCACGAGTATAAAATCCATATGCATTATACTCGTATATATTACTAGCGCAAGTTTATAATTTATATAATATGAATTTGATAAAAAATAATATACATTTTACATATATTTCTTTTTTTTTTTTACAATATACATTCTTTTACACTTATATGAGAAATTGTAATGTAAATAAATTGATTCGATATATAACAGAAGCATGCACGTATAAACGTGTACTTTTCAATCGAATCACTAATTGATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAAATGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAATAATAAAAATTAATATTAAACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCATATTAAAATTAATAATACATGTCCTGAC]

[+] EMBL BI511048             [CTATTATACAATCACGAGTATAAAATCCATATGCATTATACTCGTATATATTACTAGCGCAAGTTTATAATTTATATAATATGAATTTGATAAAAAATAATATACATTTTACATATATTTCTTTTTTTTTTTTACAATATACATTCTTTTACACTTATATGAGAAATTGTAATGTAAATAAATTGATTCGATATATAACAGAAGCATGCACGTATAAACGTGTACTTTTCAATCGAATCACTAATTGATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAAATGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAATAATAAAAATTAATATTAAACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCATATTAAAATTAATAATACATGTCCTGAC]




>consensus_1831#1
CTATTATACAATCACGAGTATAAAATCCATATGCATTATACTCGTATATATTACTAGCGC
AAGTTTATAATTTATATAATATGAATTTGATAAAAAATAATATACATTTTACATATATTT
CTTTTTTTTTTTTACAATATACATTCTTTTACACTTATATGAGAAATTGTAATGTAAATA
AATTGATTCGATATATAACAGAAGCATGCACGTATAAACGTGTACTTTTCAATCGAATCA
CTAATTGATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAA
ATGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAATAATAAAAATTAATATTAA
ACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCATATTAA
AATTAATAATACATGTCCTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1831#0      ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAAT 60
consensus_1831#1      -----------------CTATTATA-CAATCACGAG-TATAAA-ATCCATATGCATTA-T 39
                                            *** *  *** *** **** * **     * ** ** *

consensus_1831#0      ACTTACTTGTGTT-TTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAA 119
consensus_1831#1      ACTCGTATATATTACTAGCGCAAGTTTATAATTTATATAATATGAATTTGATA---AAAA 96
                      ***    * * **  * **   * *   **  ****   ***  * * * * *   * **

consensus_1831#0      TAAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCA 179
consensus_1831#1      ATAATATACATTTTACATATATTTCTTTTTTTTTTTTACAATATACATTC-----TTTTA 151
                        ***  * ******   * * * ** * ***  *  *    *  *** *     *   *

consensus_1831#0      GTCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTT 239
consensus_1831#1      CACTTATATGAGAAATTGT-------AATGTAAATAAATTGATTCGATATATAACA---- 200
                        * ** *  *  *** *        *  * *****  ** ***  *  *    **    

consensus_1831#0      CAACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTG 299
consensus_1831#1      ----GAAGCATGCACGTATAA--ACGTGTACT-------TTTCAATCGAATCACTAATTG 247
                          * * *****   *****  *** * ***        **** *   * *  *  ***

consensus_1831#0      CATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAA-CAGAATAATTAAA 358
consensus_1831#1      ------ATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAAA 301
                            ***** * *  * *  * *** * * *  *  * * * *  ** *   ** ***

consensus_1831#0      ACTGTTAA-TAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCG 417
consensus_1831#1      TGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAA--TAATAAAAATTAATATTA 359
                        *  ***  ***  * *    ****    * * **  **    ** *       *    

consensus_1831#0      CATTTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATT--GTCAGGACATGTATTATT 475
consensus_1831#1      AACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCAT-ATT 418
                       *    **    **   ** * *  ** * **  * * **   * *  * *** ** ***

consensus_1831#0      AATTTTAATA-TGCATTTTTTCATGAAAAAATGCTA 510
consensus_1831#1      AAAATTAATAATACATGTCCTGAC------------ 442
                      **  ****** * *** *  * *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)