cluster # 1872

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Apis mellifera
cluster # 1872 cluster # 1872 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1872#0 length = 453 sequences # 1

consensus_1872#1 length = 405 sequences # 1

consensusID : consensus_1872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTAAAAAAAGGCAACAACGAGTATTAATGATATTAGATAGCAAAAATGTAGAATACGAAACAATTGATATAACGGAACCAGGGAAAGAAATGGAAAAAGAATTTATGCAAGCTAATAGTATCGCGAGAGAAAGTAAATATCCATTACCTCCACAAATATTTAATGAAGAAGAATATTGCGGGGATTATGAAGATTTTGATTTGGCAAATGAAATAGATGAATTGGAAGAATTTTTAAAAGTAGCACC]

[+] EMBL BI509190             [GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTAAAAAAAGGCAACAACGAGTATTAATGATATTAGATAGCAAAAATGTAGAATACGAAACAATTGATATAACGGAACCAGGGAAAGAAATGGAAAAAGAATTTATGCAAGCTAATAGTATCGCGAGAGAAAGTAAATATCCATTACCTCCACAAATATTTAATGAAGAAGAATATTGCGGGGATTATGAAGATTTTGATTTGGCAAATGAAATAGATGAATTGGAAGAATTTTTAAAAGTAGCACC]




>consensus_1872#0
GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATA
CTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGA
AGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACA
TATCGGGCATCAGCGGAAACAAAGAAGTAAAAAAAGGCAACAACGAGTATTAATGATATT
AGATAGCAAAAATGTAGAATACGAAACAATTGATATAACGGAACCAGGGAAAGAAATGGA
AAAAGAATTTATGCAAGCTAATAGTATCGCGAGAGAAAGTAAATATCCATTACCTCCACA
AATATTTAATGAAGAAGAATATTGCGGGGATTATGAAGATTTTGATTTGGCAAATGAAAT
AGATGAATTGGAAGAATTTTTAAAAGTAGCACC

consensusID : consensus_1872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTGCGAAAAACTAAAGAATATAAAAATATTTTATCCGAGAGCTAGGAACAAAAAAGAAGAGAGAATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAATGCCAGATTTACCGGGCACCTGAATTCTAACGATATTTCACGTCTACGTTGTATCGGATT]

[+] EMBL BI511251             [ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGTTGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAACCGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATCGACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTGCGAAAAACTAAAGAATATAAAAATATTTTATCCGAGAGCTAGGAACAAAAAAGAAGAGAGAATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAATGCCAGATTTACCGGGCACCTGAATTCTAACGATATTTCACGTCTACGTTGTATCGGATT]




>consensus_1872#1
ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGT
TGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAAC
CGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATC
GACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTG
CGAAAAACTAAAGAATATAAAAATATTTTATCCGAGAGCTAGGAACAAAAAAGAAGAGAG
AATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAATGCCAGATTTACCGG
GCACCTGAATTCTAACGATATTTCACGTCTACGTTGTATCGGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1872#0      ---------------------------GCCCGTGCGTGTTAAATCAGTGTTGCTCACCGT 33
consensus_1872#1      ATGACGTAGCTAGTGGATCCCAGACTAGCCCGTGCGTGTTAAATCAGTGTTGCTCACCGT 60
                                                 *********************************

consensus_1872#0      TGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAAC 93
consensus_1872#1      TGGTGATCTGTGAACTAATAGCCTATACTGATTCACTGATCGCTTATCACTTCGTGAAAC 120
                      ************************************************************

consensus_1872#0      CGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATC 153
consensus_1872#1      CGCTAACCGTGGCACATATCGAACAGAAGTGCGAGAGTGTCAATTAGTAACGAAAGCATC 180
                      ************************************************************

consensus_1872#0      GACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTAAAAA 213
consensus_1872#1      GACTAACAATGGTCGTTAAAATCTACATATCGGGCATCAGCGGAAACAAAGAAGTGAGTG 240
                      ******************************************************* *   

consensus_1872#0      AAGGCAAC-AACGAGTATTAATGATATTAGATAGCAAAAATGTAGAATACGAAACAATTG 272
consensus_1872#1      CGAAAAACTAAAGAATATAAA-AATATTTTATC-CGAGAGCTAGGAACAAAAAAGAAGAG 298
                           *** ** ** *** **  *****  **  * * *     *** *  *** **  *

consensus_1872#0      ATATAACGGAACCAGGGAAAGAAATGGAAAAAGAATTTATGCAAGCTAATAGTATCGCGA 332
consensus_1872#1      A-------GAATGTGTGTGTGTGTATGTGAATTCGTATATGTATGTGACTTGAAT-GCCA 350
                      *       ***   * *   *     *  **    * **** * *  * * * ** ** *

consensus_1872#0      GAGAAAGTAAATATCCATTACCTCCACAAATATTTAATGAAGAAGAATATTGCGGGGATT 392
consensus_1872#1      GATTTACCGGGCACCTG--AATTCTAACGATATTTCACGTCTACGT-TGTATCG--GATT 405
                      **   *      * *    *  ** *   ****** * *   * *  * *  **  ****

consensus_1872#0      ATGAAGATTTTGATTTGGCAAATGAAATAGATGAATTGGAAGAATTTTTAAAAGTAGCAC 452
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      C 453
consensus_1872#1      -

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)