cluster # 1913

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Apis mellifera
cluster # 1913 cluster # 1913 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1913#0 length = 585 sequences # 1

consensus_1913#1 length = 337 sequences # 1

consensusID : consensus_1913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGCTATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATAAGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATTTATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTAGCTACAAAATAAACTTATAGCGTTATAATATTATTATTGTATATTATACATCGTTTCGTCTTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGAAAATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTATACAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAAAATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGTGCAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT]

[+] EMBL BI512124             [TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGCTATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATAAGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATTTATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTAGCTACAAAATAAACTTATAGCGTTATAATATTATTATTGTATATTATACATCGTTTCGTCTTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGAAAATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTATACAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAAAATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGTGCAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT]




>consensus_1913#0
TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGC
TATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATA
AGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATT
TATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTA
GCTACAAAATAAACTTATAGCGTTATAATATTATTATTGTATATTATACATCGTTTCGTC
TTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGAA
AATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTATA
CAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAAA
ATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGTG
CAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT

consensusID : consensus_1913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [TTTATCCAGTCCATCTTCCTTCGATTTTGTTCCCGTCGAATTTACCGGTGGAAGAAATACGCGTTGTTTTTAGCAGGCCTAAAAACGTTACCGCTGCTTTTTACGATCGTTAAGAACACTCGCTCTTCTCCTTTATTTCTTCTCCTTGGAGGAACTTCCCGATTCTTTTTTATCCTGGAATGGATTGACTGATCGATCGTTGAAAAAGGGCACAAAGAAATTAAAGTTTGGATGTATTATAGTGATAATTTATTCGATGAAAGTTATTTTTTTTATTCCTTCGATGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAGGAATA]

[+] EMBL BI504656             [TTTATCCAGTCCATCTTCCTTCGATTTTGTTCCCGTCGAATTTACCGGTGGAAGAAATACGCGTTGTTTTTAGCAGGCCTAAAAACGTTACCGCTGCTTTTTACGATCGTTAAGAACACTCGCTCTTCTCCTTTATTTCTTCTCCTTGGAGGAACTTCCCGATTCTTTTTTATCCTGGAATGGATTGACTGATCGATCGTTGAAAAAGGGCACAAAGAAATTAAAGTTTGGATGTATTATAGTGATAATTTATTCGATGAAAGTTATTTTTTTTATTCCTTCGATGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAGGAATA]




>consensus_1913#1
TTTATCCAGTCCATCTTCCTTCGATTTTGTTCCCGTCGAATTTACCGGTGGAAGAAATAC
GCGTTGTTTTTAGCAGGCCTAAAAACGTTACCGCTGCTTTTTACGATCGTTAAGAACACT
CGCTCTTCTCCTTTATTTCTTCTCCTTGGAGGAACTTCCCGATTCTTTTTTATCCTGGAA
TGGATTGACTGATCGATCGTTGAAAAAGGGCACAAAGAAATTAAAGTTTGGATGTATTAT
AGTGATAATTTATTCGATGAAAGTTATTTTTTTTATTCCTTCGATGGAGGAAAGGGAGAT
ACATGTATTGTAATTAGACGCACCATTCGAAGGAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1913#0      TGGAGGAAAGGGAGATACATGTATTGTAATTAGACGCACCATTCGAAATAATTAAAAGGC 60
consensus_1913#1      ------------------------------------------------------------
                                                                                  

consensus_1913#0      TATGTGTTTAAACTGTTTGTTACCTGATATATTTTATAAATTCCCTTGAAATAAGGCATA 120
consensus_1913#1      ------------------------------------------------------------
                                                                                  

consensus_1913#0      AGTATCGAAATATCGAAGAAATGCTACGTTTCCCCCTATATTTAATATTAATGTTCGATT 180
consensus_1913#1      ---------------------------TTTATCCAGTCCATCTTCCTTCGAT-TTTGTTC 32
                                                  **  **  *  ** *    *  ** ** * * 

consensus_1913#0      TATTTTTATCAAACGATTAGAAATTTTTAAACTATTTTGAACAGAACACCTGATTAATTA 240
consensus_1913#1      CCGTCGAATTTACCGGTGGAAGAAATACGCGTTGTTTTTAGCAGG---CCTAAAAACGTT 89
                         *   **  * ** *   * *  *      * **** * ***    *** *  *  * 

consensus_1913#0      GCTACAAAATAAACTTATAG-CGTTATAATATTATTATTGTATATTATACATCGTTTCGT 299
consensus_1913#1      ACCGCTGCTT---TTTACGATCGTTAAGAACACTCGCTCTTCTCCTTTATTTCTTCTCCT 146
                       *  *    *    ***    *****  *        *  * *  * **  ** * ** *

consensus_1913#0      CTTAGGAAAGCACAACATTCGCTGTGTCAAAAAATTCGTAAAATATTTAATTATCGTGGA 359
consensus_1913#1      TGGAGGAACTTCCCGATTCTTTTTTATCCTGGAATGGATTGACTGATCGAT---CGTTGA 203
                         *****    *    *    * * **    ***   *  * *  *  **   *** **

consensus_1913#0      AAATTTTTACTTTAGAATAATTCTATTCAGATATTATATATATCGTATTATTTAAATTAT 419
consensus_1913#1      AAAAGGGCAC---AAAGAAATT------AAAGTTTGGATGTATTATAGTGAT-AATTTAT 253
                      ***     **   * *  ****      * *  **  ** ***  ** *  * ** ****

consensus_1913#0      ACAAATTTGACTAGCTAATTTCTTTGTTTCATATCGAATATCCAAGAATGAAATGAAGAA 479
consensus_1913#1      TCGA---TGAA-AGTTATTTTTTTTATTCCTT---------CGATGGAGGAAAGGGAGAT 300
                       * *   ***  ** ** *** *** ** * *         * * * * **** * *** 

consensus_1913#0      AATTCTTTTGCAAAACTATATAGATTTCTTTAAATATAATATACTCTTGATATTAAATGT 539
consensus_1913#1      ACATGTATTGTAA--TTAGACGCACCATTCGAAGGAATA--------------------- 337
                      *  * * *** **   ** *   *    *  **  *  *                     

consensus_1913#0      GCAAAAAATGTGTTATAGTTTTATCAGTCTCATTAACGACCTAATT 585
consensus_1913#1      ----------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)