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Apis mellifera
cluster # 1949 cluster # 1949       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1949#0 length = 571 sequences # 1  
 consensus_1949#1 length = 503 sequences # 1  
consensusID : consensus_1949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence 
                              [AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCAATTTGAATGATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGATTTTTTTTTTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGATATGTTCCCTTACAAATTGGCGAGTTTCAACAATTTTTTG]

[+] EMBL BI510162             [AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCAATTTGAATGATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGATTTTTTTTTTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGATATGTTCCCTTACAAATTGGCGAGTTTCAACAATTTTTTG]




>consensus_1949#0
AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAAC
GCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAA
TCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAG
GGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTTGATCAAAA
TATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAAT
AAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAA
TTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCAATTTGAAT
GATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGATTTTTTTT
TTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGATATGTTCCC
TTACAAATTGGCGAGTTTCAACAATTTTTTG

consensusID : consensus_1949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence 
                              [TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAATTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAAGTAGAAAAGGGAAGAATAAAGAGAACGATTAGAAAAAAAA]

[+] EMBL BI510042             [TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAATTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCAATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATTGAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTATTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTTGATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAAATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATATAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAAGTAGAAAAGGGAAGAATAAAGAGAACGATTAGAAAAAAAA]




>consensus_1949#1
TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAA
TTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCA
ATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATT
GAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTA
TTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTT
GATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAA
ATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATA
TAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAAGTAGAAAAGGGAAGAAT
AAAGAGAACGATTAGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1949#0      ------------------------------------------------------------
consensus_1949#1      TTGTTTTTATTTTTTTTTTTTTATCTTTTATTTTTTGAAGCAGTTAATCAAGTCGATTAA 60
                                                                                  

consensus_1949#0      --------AAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCA 52
consensus_1949#1      TTTTTTTAAAAAAGCAAACTAATCGCGTCGATTAACGATTTCAATCGATGAATCGATTCA 120
                              ****************************************************

consensus_1949#0      ATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATT 112
consensus_1949#1      ATCTTAACGCTCTCGAGGATTTTCCTGGTTATTCGCAATACAAAAACTTAAAGCAAAATT 180
                      ************************************************************

consensus_1949#0      GAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTA 172
consensus_1949#1      GAGAATAATCAACGAGGCGTTTCGATTATGATCAACGGTTCAGAAACACTGTTCATTTTA 240
                      ************************************************************

consensus_1949#0      TTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTGTGTTACTTTTTTTT 232
consensus_1949#1      TTTTTAAGGGTACATATACCATTGTAAAATTTGAAGAATCTTACTNNGTTACTTTTTTTT 300
                      *********************************************  *************

consensus_1949#0      GATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAA 292
consensus_1949#1      GATCAAAATATTATATCTAATATTATATATATTTTTCAATAAAGCAAAAGTAAACAGCAA 360
                      ************************************************************

consensus_1949#0      ATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATA 352
consensus_1949#1      ATCACAATAAAAATAAAAAAAAATAATAAATAAAATAGAAAAAAAAAGAAAAGAAAAATA 420
                      ************************************************************

consensus_1949#0      TAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGATGAAACAAAAGATCGTATCATTTTCA 412
consensus_1949#1      TAAAAAAATTAAGCTTCTTCTGAACCAAAAAGGAAGAAACAAA-----GTAGAAAAGGGA 475
                      ********************************** ********     ***  *     *

consensus_1949#0      ATTTGAATGATTTCTAATAATAAAAAAAAAAAATTATATAAAATTTCTCGTTAAAAGAGA 472
consensus_1949#1      AGAATAAAGAG----AACGATTAGAAAAAAAA---------------------------- 503
                      *    ** **     **  ** * ********                            

consensus_1949#0      TTTTTTTTTTCTTTCCAATTCACACAGATTATTTTCTTCTAATTTTACATATGCGTTGAT 532
consensus_1949#1      ------------------------------------------------------------
                                                                                  

consensus_1949#0      ATGTTCCCTTACAAATTGGCGAGTTTCAACAATTTTTTG 571
consensus_1949#1      ---------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)