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Apis mellifera
cluster # 2018 cluster # 2018       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2018#0 length = 526 sequences # 1  
 consensus_2018#1 length = 386 sequences # 1  
consensusID : consensus_2018#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence 
                              [TAGTCCTGAAAAATCAGAGGATCAAGAAATTAAGGATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGACGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAACATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGAACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAAAGAAAAATGGTTTTGGGTCTAGAAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGATTAATTCAAGATGAAACACCTGTAAGACAGTCTAGAAGAATAGCACAATTAAAAATTAAAGAAGAGGCAGATAGACGAAGGATTGAAGAGGAAACTTCAAATGAAAGAAAAGAAAAGAAAGATTGTATGGAAAAGAAAAAACGAAAAAAACAAAAACCTGAAAGTGAAGAAGAAATTGTGATAAGGGAAACG]

[+] EMBL BI514935             [TAGTCCTGAAAAATCAGAGGATCAAGAAATTAAGGATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGACGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAACATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGAACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAAAGAAAAATGGTTTTGGGTCTAGAAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGATTAATTCAAGATGAAACACCTGTAAGACAGTCTAGAAGAATAGCACAATTAAAAATTAAAGAAGAGGCAGATAGACGAAGGATTGAAGAGGAAACTTCAAATGAAAGAAAAGAAAAGAAAGATTGTATGGAAAAGAAAAAACGAAAAAAACAAAAACCTGAAAGTGAAGAAGAAATTGTGATAAGGGAAACG]




>consensus_2018#0
TAGTCCTGAAAAATCAGAGGATCAAGAAATTAAGGATATAAGTGATGACCAGAGTACTAT
CCATTCAATTACAATTGGAAGGAAAACAAGAGGACGTCCTAGAGGAAGACGAAGACGTGG
CTATAGGGGAAGTGGACGTTCAAATCGGCCAAAACATTCTGAATTTCAAAGCATTCAATC
TTCTGAAATATCACCTGAAGTTCATCTTGATGGAACACCAAGTAATAATGATTCTTTAAA
TATGACACCAATTTCACAGAAAAAACGAAAGAAAAGAAAAATGGTTTTGGGTCTAGAAGT
AGGAAGAGATATTGTTCCTGAAACACAGACAGGATTAATTCAAGATGAAACACCTGTAAG
ACAGTCTAGAAGAATAGCACAATTAAAAATTAAAGAAGAGGCAGATAGACGAAGGATTGA
AGAGGAAACTTCAAATGAAAGAAAAGAAAAGAAAGATTGTATGGAAAAGAAAAAACGAAA
AAAACAAAAACCTGAAAGTGAAGAAGAAATTGTGATAAGGGAAACG

consensusID : consensus_2018#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence 
                              [AGTTCAGAAGATGAGGCTATGAAATGTAGTCCTGAAAAATCAGAGGATCAAGAAATTAAGGATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGACGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAACATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGAACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAAAAAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGATTAATTCAAGATGAAACACCTGTAAGACAGTCTAGAAGAATAGCACA]

[+] EMBL BI512776             [AGTTCAGAAGATGAGGCTATGAAATGTAGTCCTGAAAAATCAGAGGATCAAGAAATTAAGGATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGACGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAACATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGAACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAAAAAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGATTAATTCAAGATGAAACACCTGTAAGACAGTCTAGAAGAATAGCACA]




>consensus_2018#1
AGTTCAGAAGATGAGGCTATGAAATGTAGTCCTGAAAAATCAGAGGATCAAGAAATTAAG
GATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGA
CGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAA
CATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGA
ACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAA
AAAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGATTAATTCAAGATGAAACACCT
GTAAGACAGTCTAGAAGAATAGCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2018#0      --------------------------TAGTCCTGAAAAATCAGAGGATCAAGAAATTAAG 34
consensus_2018#1      AGTTCAGAAGATGAGGCTATGAAATGTAGTCCTGAAAAATCAGAGGATCAAGAAATTAAG 60
                                                **********************************

consensus_2018#0      GATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGA 94
consensus_2018#1      GATATAAGTGATGACCAGAGTACTATCCATTCAATTACAATTGGAAGGAAAACAAGAGGA 120
                      ************************************************************

consensus_2018#0      CGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAA 154
consensus_2018#1      CGTCCTAGAGGAAGACGAAGACGTGGCTATAGGGGAAGTGGACGTTCAAATCGGCCAAAA 180
                      ************************************************************

consensus_2018#0      CATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGA 214
consensus_2018#1      CATTCTGAATTTCAAAGCATTCAATCTTCTGAAATATCACCTGAAGTTCATCTTGATGGA 240
                      ************************************************************

consensus_2018#0      ACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAA 274
consensus_2018#1      ACACCAAGTAATAATGATTCTTTAAATATGACACCAATTTCACAGAAAAAACGAAAGAAA 300
                      ************************************************************

consensus_2018#0      AGAAAAATGGTTTTGGGTCTAGAAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGA 334
consensus_2018#1      A---------------------AAGTAGGAAGAGATATTGTTCCTGAAACACAGACAGGA 339
                      *                     **************************************

consensus_2018#0      TTAATTCAAGATGAAACACCTGTAAGACAGTCTAGAAGAATAGCACAATTAAAAATTAAA 394
consensus_2018#1      TTAATTCAAGATGAAACACCTGTAAGACAGTCTAGAAGAATAGCACA------------- 386
                      ***********************************************             

consensus_2018#0      GAAGAGGCAGATAGACGAAGGATTGAAGAGGAAACTTCAAATGAAAGAAAAGAAAAGAAA 454
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      GATTGTATGGAAAAGAAAAAACGAAAAAAACAAAAACCTGAAAGTGAAGAAGAAATTGTG 514
consensus_2018#1      ------------------------------------------------------------
                                                                                  

consensus_2018#0      ATAAGGGAAACG 526
consensus_2018#1      ------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)