cluster # 2181

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Apis mellifera
cluster # 2181 cluster # 2181 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2181#0 length = 582 sequences # 1

consensus_2181#1 length = 449 sequences # 1

consensusID : consensus_2181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [TTCTTGGTGAACTAGATGGAATTGATGTATTATTACAACAATTAGCATATTATAAAAGACATGATCCTCAAACAGCAGAAGAGCAAGAAATGATGGAAAATTTATTTAATGTATTATGTTCAAGTCTCATGGCAACTGTAAACAGAGATAGATTTTTAAGAGGAGAACGATTGCAACTTATGAATTTAATGTTGCGAGAAAAAAAAAATGTCTAGGAATGGTTCTCTTAAAGTATTAGATCATGCAATGAATGGACCAGATGGAAAAGATAATTGCAGTAAATTTGTTGATATTCTTGGATTAAGAACAATATTTCCTTTATTCATGAAAACGCCAACAAAAAATAGAAAGAGAATGCTTACTGCGGAAGAACACGAAGAACATGTAATATCAATTATAGCAAGTATGCTAAGGAACTGTAAAGGACAACAACGTCAAAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAGTAGATCGATTGATGGAGCTTCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAAATACAAAGGAAGACGAAGATGAAGAAGAATCATACTTAAGAAGA]

[+] EMBL BI509962             [TTCTTGGTGAACTAGATGGAATTGATGTATTATTACAACAATTAGCATATTATAAAAGACATGATCCTCAAACAGCAGAAGAGCAAGAAATGATGGAAAATTTATTTAATGTATTATGTTCAAGTCTCATGGCAACTGTAAACAGAGATAGATTTTTAAGAGGAGAACGATTGCAACTTATGAATTTAATGTTGCGAGAAAAAAAAAATGTCTAGGAATGGTTCTCTTAAAGTATTAGATCATGCAATGAATGGACCAGATGGAAAAGATAATTGCAGTAAATTTGTTGATATTCTTGGATTAAGAACAATATTTCCTTTATTCATGAAAACGCCAACAAAAAATAGAAAGAGAATGCTTACTGCGGAAGAACACGAAGAACATGTAATATCAATTATAGCAAGTATGCTAAGGAACTGTAAAGGACAACAACGTCAAAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAGTAGATCGATTGATGGAGCTTCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAAATACAAAGGAAGACGAAGATGAAGAAGAATCATACTTAAGAAGA]




>consensus_2181#0
TTCTTGGTGAACTAGATGGAATTGATGTATTATTACAACAATTAGCATATTATAAAAGAC
ATGATCCTCAAACAGCAGAAGAGCAAGAAATGATGGAAAATTTATTTAATGTATTATGTT
CAAGTCTCATGGCAACTGTAAACAGAGATAGATTTTTAAGAGGAGAACGATTGCAACTTA
TGAATTTAATGTTGCGAGAAAAAAAAAATGTCTAGGAATGGTTCTCTTAAAGTATTAGAT
CATGCAATGAATGGACCAGATGGAAAAGATAATTGCAGTAAATTTGTTGATATTCTTGGA
TTAAGAACAATATTTCCTTTATTCATGAAAACGCCAACAAAAAATAGAAAGAGAATGCTT
ACTGCGGAAGAACACGAAGAACATGTAATATCAATTATAGCAAGTATGCTAAGGAACTGT
AAAGGACAACAACGTCAAAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAGTA
GATCGATTGATGGAGCTTCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAAAT
ACAAAGGAAGACGAAGATGAAGAAGAATCATACTTAAGAAGA

consensusID : consensus_2181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [ACGAATTTTAGCTCAAAGAAGAGCATCCCTCAAAACAATAAGACACATTATGCGAGAATATGCAGGAAATCTTGGCGATGCTGGAGATTCAGAATGGAGAGAAGCAGAACAACAACGTCAAAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAGTAGATCGATTGATGGAGCTTCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAAAATACAAAGGAAGAAAAGAAAAAGAAAATATCGATACAATAAGAATATGATATCTGATTGTTGTTACTTTACATACGTGTAAGTTAAGTTTCATTNNTTCTTTTGTTCTTAACTTTTATTATAAGAAACAGATCAGAAACATTTCTTAGAAATTAAAATAAAACGTTTTCAAAATTAAAATGAATGCGTTCCACAATTTTAAGATTGACGAATAATAATCGCGAATAA]

[+] EMBL BI516652             [ACGAATTTTAGCTCAAAGAAGAGCATCCCTCAAAACAATAAGACACATTATGCGAGAATATGCAGGAAATCTTGGCGATGCTGGAGATTCAGAATGGAGAGAAGCAGAACAACAACGTCAAAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAGTAGATCGATTGATGGAGCTTCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAAAATACAAAGGAAGAAAAGAAAAAGAAAATATCGATACAATAAGAATATGATATCTGATTGTTGTTACTTTACATACGTGTAAGTTAAGTTTCATTNNTTCTTTTGTTCTTAACTTTTATTATAAGAAACAGATCAGAAACATTTCTTAGAAATTAAAATAAAACGTTTTCAAAATTAAAATGAATGCGTTCCACAATTTTAAGATTGACGAATAATAATCGCGAATAA]




>consensus_2181#1
ACGAATTTTAGCTCAAAGAAGAGCATCCCTCAAAACAATAAGACACATTATGCGAGAATA
TGCAGGAAATCTTGGCGATGCTGGAGATTCAGAATGGAGAGAAGCAGAACAACAACGTCA
AAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAGTAGATCGATTGATGGAGCT
TCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAAAATACAAAGGAAGAAAAGA
AAAAGAAAATATCGATACAATAAGAATATGATATCTGATTGTTGTTACTTTACATACGTG
TAAGTTAAGTTTCATTNNTTCTTTTGTTCTTAACTTTTATTATAAGAAACAGATCAGAAA
CATTTCTTAGAAATTAAAATAAAACGTTTTCAAAATTAAAATGAATGCGTTCCACAATTT
TAAGATTGACGAATAATAATCGCGAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2181#0      TTCTTGGTGAACTAGATGGAATTGATGTATTATTACAACAATTAGCATATTATAAAAGAC 60
consensus_2181#1      -------------------------------------ACGAATTTTAGCTCAAAGAAGA- 22
                                                           ** * *   *  * * * **** 

consensus_2181#0      ATGATCCTCAAACAGCAGAAGAGCAAGAAATGATGGAAAATTTATTTAATGT--ATTATG 118
consensus_2181#1      GCATCCCTCAAA--ACAATAAGACACATTATGCGAGAATATGCAGGAAATCTTGGCGATG 80
                           *******   **  *   **    ***   *** **  *   *** *     ***

consensus_2181#0      TTCAAGTCTCATGGCAACTGTAAACAGAGATAGATTTTTAAGAGGAGAACGATTGCAACT 178
consensus_2181#1      CTGGAGATTCAGAATGGAGAGAAGCAGAACAACAACGTCAA-AGATTGTTGAGTA-AATT 138
                       *  **  ***          ** ****   * *   * ** **      ** *  ** *

consensus_2181#0      TATGAATTTAATGTTGCGAGAAAAAAAAAATGTCTAGGAATGGTTCTCTTAAAGTATTAG 238
consensus_2181#1      CACAGAA--AATGATTACGAAAAAGTAGATCGATTGATGGAGCTTCATTTTAAATATC-- 194
                       *   *   **** *     ****  * *  *  *      * ***  ** ** ***   

consensus_2181#0      ATCATGCAATGAATGGACCAGATGGAAAAGATAATTGCAGTAAATTTGTTGATATTCTTG 298
consensus_2181#1      TTGAAAAAGTGGAGGAAGTGGAAAAAAAATACAAAGGAAGAAAAGAAAAAGAAAATATCG 254
                       * *   * ** * * *   **   **** * **  * ** ***      ** * * * *

consensus_2181#0      GATTAAGAACAATATTTCCTTTATTCATGAAAACGCCAACAAAAAATAGAAAGAGAATGC 358
consensus_2181#1      ATACAATAAGAATATGATATCTGATTGTTGTTACTTTACATACGTGTAAGTTAAGTTTCA 314
                          ** ** *****    * *  *  *    **   *   *    **     **  *  

consensus_2181#0      TTACTGCGGAAGAACACGAAGAACATGTAATATCAATTATAGCAAGTATGCTAAGGAACT 418
consensus_2181#1      TTNNTTCTTTTG-----------TTCTTAACTTTTATTATAAGAAACAGATCAGAAACAT 363
                      **  * *    *               ***  *  ******  **  *    *   *  *

consensus_2181#0      GTAAAGGACAACAACGTCAAAGATTGTTGAGTAAATTCACAGAAAATGATTACGAAAAAG 478
consensus_2181#1      TTCTTAGAAATTAAAATAAAACGTTTT----CAAAATTAAAATGAATGCGTTCCACAATT 419
                       *    ** *  **  * ***  ** *     *** * * *   ****  * * * **  

consensus_2181#0      TAGATCGATTGATGGAGCTTCATTTTAAATATCTTGAAAAAGTGGAGGAAGTGGAAAAAA 538
consensus_2181#1      TTAA--GATTGACGAATAATAATCGCGAATAA---------------------------- 449
                      *  *  ****** * *   * **    ****                             

consensus_2181#0      ATACAAAGGAAGACGAAGATGAAGAAGAATCATACTTAAGAAGA 582
consensus_2181#1      --------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)