cluster # 2368

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Apis mellifera
cluster # 2368 cluster # 2368 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2368#0 length = 208 sequences # 1

consensus_2368#1 length = 181 sequences # 1

consensusID : consensus_2368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 208
fasta sequence

                              [TGTGAAAATGGTGCGAGAGTGATCGAGATCGTACTTTTCGAGAAAGTACGATCCGAAACTCGATCCGGGAGAGAGGGAGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGTGGGAGAAGAAGAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAGGCGGTCGTTTTTGCAGGGGGTCGGGTTG]

[+] EMBL BI514990             [TGTGAAAATGGTGCGAGAGTGATCGAGATCGTACTTTTCGAGAAAGTACGATCCGAAACTCGATCCGGGAGAGAGGGAGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGTGGGAGAAGAAGAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAGGCGGTCGTTTTTGCAGGGGGTCGGGTTG]




>consensus_2368#0
TGTGAAAATGGTGCGAGAGTGATCGAGATCGTACTTTTCGAGAAAGTACGATCCGAAACT
CGATCCGGGAGAGAGGGAGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGTGGGAGAAGAA
GAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAG
GCGGTCGTTTTTGCAGGGGGTCGGGTTG

consensusID : consensus_2368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [CTCGAGCGTGGGACGGGGGAGGGGAGGGGAGAGTGGAGGGGAAAGGAAACGGATTCGAGGAGAGAGAGTGGGAGAAGAAGAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAGGCGGTCGTTTTTGCAGGGGGTCGGGTTGTCGTTTCACCAACC]

[+] EMBL BI514012             [CTCGAGCGTGGGACGGGGGAGGGGAGGGGAGAGTGGAGGGGAAAGGAAACGGATTCGAGGAGAGAGAGTGGGAGAAGAAGAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAGGCGGTCGTTTTTGCAGGGGGTCGGGTTGTCGTTTCACCAACC]




>consensus_2368#1
CTCGAGCGTGGGACGGGGGAGGGGAGGGGAGAGTGGAGGGGAAAGGAAACGGATTCGAGG
AGAGAGAGTGGGAGAAGAAGAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACA
AGAGAACGAGAGAAAGAAGGCGGTCGTTTTTGCAGGGGGTCGGGTTGTCGTTTCACCAAC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2368#0      TGTGAAAATGGTGCGAGAGTGATCGAGATCGTACTTTTCGAGAAAGTACGATCCGAAACT 60
consensus_2368#1      --------------------------------------CTCGAGCGTGGGACGGGGGAGG 22
                                                            *  **  **  **   *  *  

consensus_2368#0      CGATCCGGGAGAGAGGGAGAGAATGAGAGGGAGAGAGAGAGAGAGAGAGTGGGAGAAGAA 120
consensus_2368#1      GGA--GGGGAGAGTGGAGGGGAAAGGAAACGGATTCGAG-GAGAGAGAGTGGGAGAAGAA 79
                       **   ******* **  * *** *  *  *     *** ********************

consensus_2368#0      GAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAG 180
consensus_2368#1      GAAAAGAAGCCGAGGATGATCGAGACGAGCAAAGAGTTACAAGAGAACGAGAGAAAGAAG 139
                      ************************************************************

consensus_2368#0      GCGGTCGTTTTTGCAGGGGGTCGGGTTG-------------- 208
consensus_2368#1      GCGGTCGTTTTTGCAGGGGGTCGGGTTGTCGTTTCACCAACC 181
                      ****************************

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)