cluster # 2383

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Apis mellifera
cluster # 2383 cluster # 2383 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2383#0 length = 607 sequences # 1

consensus_2383#1 length = 522 sequences # 1

consensusID : consensus_2383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [AGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCCATTGCTTGGTCAAACCATTCCACAACCTACAAATATTTTACAAAAACAATATGATAGAACTTCGAGAAGTCAAAAACTTGCACCTAGATTCCAAAAACAGCGTTTAGCTAAACAACAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAAATATGCACATCCGATGCGAATGATACAATCAAAATTAACAATTCATCAAATAATTTCGGTAAAGATTCATCAACTGGACCCGCACCTCCACCATCTGTGAATGCTTGGGATAAACCGTTCACTACGAGTCAGTTACAATCAAATTCTCCATCAACAGTTTCTTCTGATATCCAATTGATATCAAGTTTGTCAACACAAAATGAACATGGTCACGTTCATAGTCACGAAGTTAACGAACAAACAAATTCTGGTAATAGTAGTCAACGAAATTCACCAAGTGGTGAAAAAAATATTGGCTAAAGTTTGAAAGATCAACTTCTAGAAAAAAGTTCAGTTTCTGACGTATCTTCACCTCCTGTTCAAACGTTAATTTTTGAGAATACAAAT]

[+] EMBL BI503443             [AGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCCATTGCTTGGTCAAACCATTCCACAACCTACAAATATTTTACAAAAACAATATGATAGAACTTCGAGAAGTCAAAAACTTGCACCTAGATTCCAAAAACAGCGTTTAGCTAAACAACAGCAGCAGCAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAAATATGCACATCCGATGCGAATGATACAATCAAAATTAACAATTCATCAAATAATTTCGGTAAAGATTCATCAACTGGACCCGCACCTCCACCATCTGTGAATGCTTGGGATAAACCGTTCACTACGAGTCAGTTACAATCAAATTCTCCATCAACAGTTTCTTCTGATATCCAATTGATATCAAGTTTGTCAACACAAAATGAACATGGTCACGTTCATAGTCACGAAGTTAACGAACAAACAAATTCTGGTAATAGTAGTCAACGAAATTCACCAAGTGGTGAAAAAAATATTGGCTAAAGTTTGAAAGATCAACTTCTAGAAAAAAGTTCAGTTTCTGACGTATCTTCACCTCCTGTTCAAACGTTAATTTTTGAGAATACAAAT]




>consensus_2383#0
AGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCCATTGCT
TGGTCAAACCATTCCACAACCTACAAATATTTTACAAAAACAATATGATAGAACTTCGAG
AAGTCAAAAACTTGCACCTAGATTCCAAAAACAGCGTTTAGCTAAACAACAGCAGCAGCA
ACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAAATATGCACATCCGATGCGAA
TGATACAATCAAAATTAACAATTCATCAAATAATTTCGGTAAAGATTCATCAACTGGACC
CGCACCTCCACCATCTGTGAATGCTTGGGATAAACCGTTCACTACGAGTCAGTTACAATC
AAATTCTCCATCAACAGTTTCTTCTGATATCCAATTGATATCAAGTTTGTCAACACAAAA
TGAACATGGTCACGTTCATAGTCACGAAGTTAACGAACAAACAAATTCTGGTAATAGTAG
TCAACGAAATTCACCAAGTGGTGAAAAAAATATTGGCTAAAGTTTGAAAGATCAACTTCT
AGAAAAAAGTTCAGTTTCTGACGTATCTTCACCTCCTGTTCAAACGTTAATTTTTGAGAA
TACAAAT

consensusID : consensus_2383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [GAAGAATCATTCCAACAATATTCCGCCGTTGATACAAACCACTCAAATACAAAATGGAAGATCGAGAAATCAAACTTCTGGAAATAGTTTATCGATTTCAAATAAATCGATAACAAAAGATACTACAGTGAATCGTTTAGATGAAATAAAATTAAGCGATTCTAATTTAGTTAGTCAAGCTCTTAATGATATTAATAAAAGATCCCAAGGAAAAGAGAAGAAGCCAATGATCGATTGTGAAATGGAAATAAATAATTGTATTGAGGATGTTCCTAACATTGTTGAAGATAAAGTTGATTCTGATGGCTTTCAGGAAGTTCGTTCAAAGAAAAACGTAAAAGAATCTAGACATGGCTCAAAAGAAGAGACAAAACCTGCAAAACGTGAAAAGGAAAAAGATAGAGAACGCGACCGTTCAAAGTCAAAAGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCCATTGCTTGGTCAAACCATTCCACAACCTACAAATATTTTACA]

[+] EMBL BI513277             [GAAGAATCATTCCAACAATATTCCGCCGTTGATACAAACCACTCAAATACAAAATGGAAGATCGAGAAATCAAACTTCTGGAAATAGTTTATCGATTTCAAATAAATCGATAACAAAAGATACTACAGTGAATCGTTTAGATGAAATAAAATTAAGCGATTCTAATTTAGTTAGTCAAGCTCTTAATGATATTAATAAAAGATCCCAAGGAAAAGAGAAGAAGCCAATGATCGATTGTGAAATGGAAATAAATAATTGTATTGAGGATGTTCCTAACATTGTTGAAGATAAAGTTGATTCTGATGGCTTTCAGGAAGTTCGTTCAAAGAAAAACGTAAAAGAATCTAGACATGGCTCAAAAGAAGAGACAAAACCTGCAAAACGTGAAAAGGAAAAAGATAGAGAACGCGACCGTTCAAAGTCAAAAGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCCATTGCTTGGTCAAACCATTCCACAACCTACAAATATTTTACA]




>consensus_2383#1
GAAGAATCATTCCAACAATATTCCGCCGTTGATACAAACCACTCAAATACAAAATGGAAG
ATCGAGAAATCAAACTTCTGGAAATAGTTTATCGATTTCAAATAAATCGATAACAAAAGA
TACTACAGTGAATCGTTTAGATGAAATAAAATTAAGCGATTCTAATTTAGTTAGTCAAGC
TCTTAATGATATTAATAAAAGATCCCAAGGAAAAGAGAAGAAGCCAATGATCGATTGTGA
AATGGAAATAAATAATTGTATTGAGGATGTTCCTAACATTGTTGAAGATAAAGTTGATTC
TGATGGCTTTCAGGAAGTTCGTTCAAAGAAAAACGTAAAAGAATCTAGACATGGCTCAAA
AGAAGAGACAAAACCTGCAAAACGTGAAAAGGAAAAAGATAGAGAACGCGACCGTTCAAA
GTCAAAAGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCC
ATTGCTTGGTCAAACCATTCCACAACCTACAAATATTTTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2383#0      AGCAAATGGTGGTTCGCAGCAAACTTCTTTGCAACAAGTACAAAATATACCGCCATTGCT 60
consensus_2383#1      -------------------------------------------------GAAGAATCATT 11
                                                                            **   *

consensus_2383#0      TGGTCAAACCATTCCACAACCTACAAATATTTTACAAAAACAATATGATAGAACTTCGAG 120
consensus_2383#1      CCAACAA--TATTCCGCCGTTGATACAAACCACTCAAATACAAAATGGAAGA---TCGAG 66
                          ***   ***** *     * * * *     **** **** ***  ***   *****

consensus_2383#0      AAGTCAAAAACTTGCACCTAGATTCCAAAAACAGCGTTTAGCTAAACAACAGCAGCAGCA 180
consensus_2383#1      AAATCAAACTTCTGGAAATAGTTT-----ATCGATTTCAAATAAATCGATAACAAAAGAT 121
                      ** *****    ** *  *** **     * *    *  *   ** * * * **  **  

consensus_2383#0      ACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAAATATGCACATCCGATGCGAA 240
consensus_2383#1      ACTACAGTG--AATCGTT-TAGATGAAATAAAATTAAGCGAT-TCTAATTTAGTTAGTCA 177
                      ** ***     **  *    **  * ** ** *  **   ** *  *  *  * *    *

consensus_2383#0      TGATACAATCAAAATTAACAATTCATCAAATAATTTCGGTAAAGATTCATCAACTGGACC 300
consensus_2383#1      AGCTCTTAATGATATTAATAAAAGATCCCAAGGAAAAGAGAAGAAGCCAATGATCGATTG 237
                       * *   *   * ***** **   ***  *       *  **  *  **   *  *    

consensus_2383#0      CGCACCTCCACCATCTGTGAATGCTTGGGATAAACCGTTCACTACGAGTCAGTTACAATC 360
consensus_2383#1      TGAAATGGAAATAAATAATTGTATTGAGGATGTTCCTAACATT--------GTTGAAGAT 289
                       * *     *  *  *     *  *  ****   **   ** *        ***  *   

consensus_2383#0      AAATTCTCCATCAACAGTTTCTTCTGATATCCAATTGATATCAAGTTTGTCAACACAAAA 420
consensus_2383#1      AAAGTTGATTCTGATGGCTT-TCAGGAAGTTCGTTCAAAGAAAAACGT---AAAAGAATC 345
                      *** *        *  * ** *   **  * *  *  *    **   *   ** * **  

consensus_2383#0      TGAACATGGTCACGTTCATAGTCACGAAGTTAACGAACAAACAAATTCTGGTAATAGTAG 480
consensus_2383#1      TAGACATGGCT-CAAAAGAAGAGACAAAACCTGCAAAACGTGAAAAG--GAAAAAGATAG 402
                      *  ******   *      **  ** **     * **     ***    *  **   ***

consensus_2383#0      TCAACGAAATTCACCAAGTGGTGAAAAAAATATTGGCTAAAGTTTGAAAGATCAACTTCT 540
consensus_2383#1      AGAACGCGACCGTTCAAAGTCAAAAGCAAATGGTG------GTTCGCAGCA--AACTTCT 454
                        ****  *     ***      **  ****  **      *** * *  *  *******

consensus_2383#0      A-GAAAAAAGTTCAGTTTCTGACGTATCTTCACCTCCTGTTCAAACGTTAATTTTTGAGA 599
consensus_2383#1      TTGCAACAAGTACAA-----AATATACCGCCATTGCTTGGTCAAAC---CATTCCACAAC 506
                        * ** **** **       *  ** *  **   * ** ******    ***    *  

consensus_2383#0      ATACAAAT-------- 607
consensus_2383#1      CTACAAATATTTTACA 522
                       *******

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)