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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 642 fasta sequence
[GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGACGATCGCGATTAGCGAAAAGAAACGGGAACGGTCGATCACGGGATAACTTTCGAGTATCGAG]
[+] EMBL BI504677 [GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGACGA ]
[+] EMBL BI502803 [GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGA ]
[+] EMBL BI509000 [ GTTATTTACGATAGACATCCGGAAGGCGTTGCACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAAGACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTGGAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAATACAAAACGAAGCGAAATATCATTGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATATCGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAAAGCACATGCTTTATACGAAATACACAATTAAGAGTAACGTTGACGATCGCGATTAGCGAAAAGAAACGGGAACGGTCGATCACGGGATAACTTTCGAGTATCGAG]
consensusID : consensus_239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence
[ACTAATAATTGTAATGGCAAATTGTCAAGATACGGATAAGACTGAAGATTTCATGAAATATTACAAATTTGATGGCCAATCTTATATATATAATGATCCTACGAATAATGTGACATATAAGTTTGATCAAGAAAAGAATGAATGGGTGGTAAAAAATACGGAAGAAATAAATGTTAAAAATTCAAATGATAATGAATCCAAGACGCAGGAAGGAGTATTTGGTTTTGAAAATGATACTCATACGTACACAGATCCTAATGATGGCAGTGTGTATTTTTGGGACAAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGA]
[+] EMBL BI503265 [ACTAATAATTGTAATGGCAAATTGTCAAGATACGGATAAGACTGAAGATTTCATGAAATATTACAAATTTGATGGCCAATCTTATATATATAATGATCCTACGAATAATGTGACATATAAGTTTGATCAAGAAAAGAATGAATGGGTGGTAAAAAATACGGAAGAAATAAATGTTAAAAATTCAAATGATAATGAATCCAAGACGCAGGAAGGAGTATTTGGTTTTGAAAATGATACTCATACGTACACAGATCCTAATGATGGCAGTGTGTATTTTTGGGACAAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACCGAAGA]
consensusID : consensus_239#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[AAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGATACAAATCGCATAGAAACAAAACCTGTGCAACAATTTCAATCACAAGGAAAGGTCGATAAAGAGAAAAAGAAGATGGAAGCCAAAAGAAAATCACAAGAACCACCGACCTGGTTCGAAGTGGATGAAGCCCATAATACTGCTATTTACGTGTCCGGTCTACCACTAGATATTACTATGGATGAACTTACCGAGCTTTTCAACAAGTGTGGTCTCATAGCGCGAGACGAAAAAGGAAAAGACAAAATCAAATTATACAAGGATTCGAATGGACAACCAAAGGGTGACGCTCTTTGTATCTATATAAAGGTCGAATCGGTGGATTTGGCATTAAAGATCTTGGATAAATCGCAAATCAGGGGTAAA]
[+] EMBL BI503683 [AAAGAGAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTATGGGTTTACAGATACAAATCGCATAGAAACAAAACCTGTGCAACAATTTCAATCACAAGGAAAGGTCGATAAAGAGAAAAAGAAGATGGAAGCCAAAAGAAAATCACAAGAACCACCGACCTGGTTCGAAGTGGATGAAGCCCATAATACTGCTATTTACGTGTCCGGTCTACCACTAGATATTACTATGGATGAACTTACCGAGCTTTTCAACAAGTGTGGTCTCATAGCGCGAGACGAAAAAGGAAAAGACAAAATCAAATTATACAAGGATTCGAATGGACAACCAAAGGGTGACGCTCTTTGTATCTATATAAAGGTCGAATCGGTGGATTTGGCATTAAAGATCTTGGATAAATCGCAAATCAGGGGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_239#0 GAAATGCGGTGACGTCCGAAAAGTTGTTATTTACGATAGACATCCGGAAGGCGTTGCACA 60
consensus_239#1 ---------------------------------------------ACTAATAATTGTAAT 15
consensus_239#2 -------------------------------------------------------AAAGA 5
*
consensus_239#0 GGTAACATTTCGGGAACCAGCAGAAGCACAAGCTTGTATTCAATTATTAAACGGCCGTTG 120
consensus_239#1 GGCAAATTGTCAAGATACGGATAAGACTGAAGATTTCATG-AAATATTACAAATTTGATG 74
consensus_239#2 GAAAAATGCATGGTTTCCAAAGGTGGATGAAGATTTCATGGCAAGATATCAAATGAGTTA 65
* ** * *** ** ** * ** * * *
consensus_239#0 GTTCAGCCAAAGGAAAATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTT 180
consensus_239#1 GC-CAATCTTATATATATAATGATCC---TACGAA----TAATGTGACATATAAG-TTTG 125
consensus_239#2 ---TGGGTTTACAGATACAA--ATCG---CATAGAAACAAAACCTGTGCAACAAT-TTCA 116
* * * * * ** * * ** **
consensus_239#0 GGAA--ACAGACGCGGAAACGGAAGCTCGAATCGCTAAATGGGACAAATATCTAGAAACC 238
consensus_239#1 ATCA--AGAAAAGAATGAATGGGTGGTAAAAAATACGGAAGAAATAAATGTTAAAAATTC 183
consensus_239#2 ATCACAAGGAAAGGTCGATAAAGAGAAAAAGAAGATGGAAGCCAAAAG-----AAAATCA 171
* * * * * * * * * * ** * **
consensus_239#0 GAAGAGGAAAAGAAGGAAGAGGAAATTGCGAAGGACGAGTTACGAAAGGAGTCGAAACAA 298
consensus_239#1 AAATGATAATGAATCCAAGACGCAG----GAAGGAGTATTT------GGTTTTGAAA--- 230
consensus_239#2 CAAGAACCACCGACCTGGTTCGAAGTG--GATGAAGCCCATAATACTGCTATTTACG--- 226
** * * * * ** * * * * * *
consensus_239#0 GACGAAAGGCCCGTAATTACAGAGAAAACGGGGTTACCCGAAACAACAGCGAAGACATTG 358
consensus_239#1 -ATGATA--CTCATACGTACACAGA---------TCCTAATGATGGCAGTGTGTATTTTT 278
consensus_239#2 --TGTCCGGTCTACCACTAGATAT----------TACTATGGATGAACTTACCGAGCTTT 274
* ** * * * * * * **
consensus_239#0 GAAAAATCGGAAACGACACAATTCACGAATATCGCGAAATACGCGAAGACGTTGGAAAAT 418
consensus_239#1 GGGACAAAGAGAAAAATGCAT------GGTTTCCAAAGGTGGATGAAGATTT-------- 324
consensus_239#2 TCAACAAGTGTGGTCTCATAG-----------CGCGAGACGAAAAAGGAA---------- 313
* * * * * * **
consensus_239#0 ACAAAACGAAGCGAAATATCAT-TGAATTCTGGAAATTCGCAGGAAGCAATAAAAAATAT 477
consensus_239#1 ------CATGGCAAGATATCAAATGAGTTATGGG--TTTACAGGTAACATTTCGGGA--A 374
consensus_239#2 -------AAGACAAAAT--CAAATTATACAAGGA--TTCGAATGGACAACCAAAGGG--- 359
* * ** ** * * ** ** * * * *
consensus_239#0 CGAGTAGATGTAACAAAAATTCTATCGACAGATACGTATTCACGAATCGATCGCGGGAAA 537
consensus_239#1 CCAGCAGAAGCA-CAAGCTTGTATTCAATTATTAAACGGCCGTTGGTTCAGCCAAAGGAA 433
consensus_239#2 -----TGACGCTCTTTGTATCTATATAAAGGTCGAAT--CGGTGGATTTGGC--ATTAAA 410
** * * * * * **
consensus_239#0 AGCACATGCTTTA-TACGAAATA-CACAATTAAGAGTAACGTTGACGATCGCGATTAGCG 595
consensus_239#1 AATATCGGCTGAAATATGGGATGGTAAAACGAAATACAAAATTTTGGAAACAGACGCGGA 493
consensus_239#2 GATCTTGGATAAATCGCAAATCA--GGGGTAAA--------------------------- 441
* * * **
consensus_239#0 AAAAGAAACGGGAACGGTCGATCACGGGATAACTTTCGAGTA-TCGAG-- 642
consensus_239#1 AACGGAAGCTCGAATCGCTAA--ATGGGACAAATATCTAGAAACCGAAGA 541
consensus_239#2 --------------------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |