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Apis mellifera
cluster # 2511 cluster # 2511       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2511#0 length = 495 sequences # 1  
 consensus_2511#1 length = 445 sequences # 1  
consensusID : consensus_2511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence 
                              [AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTACTTAAGTATCGACGAAATTTTCACCAGTGACACACTATGTAACCAGCGGAAAAAACGGACGTGTTGATGATACGTTTCTATGGACGGGGTTTGCGATAATTATTCGTTGAGGGCATCGTACCATAATGCCAGCCAACCTAGATTAGGGACGACGGGCGGCATGATGGCTTCCTTTGCGTGATTAGATATAGGAATAAGGTCCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAGGCGTCATCCTTTCCCCGAGCTCCTCTGCTCGGCTTATATTCCAGACCTGGGTCAAATTGCATCAGCACGAAAACCTGATCTGTAGGCAATAACGTGAAATCATCTGGAGGATTTGTAATGACGTATCGTTTAGAAGAAGCATCGCACGATGAGCTTGTATCTCGAAACCTGTACAGACCAATGCACAGCATTCCATATGACTTTAATGCTGCGACAAAG]

[+] EMBL BI509396             [AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTACTTAAGTATCGACGAAATTTTCACCAGTGACACACTATGTAACCAGCGGAAAAAACGGACGTGTTGATGATACGTTTCTATGGACGGGGTTTGCGATAATTATTCGTTGAGGGCATCGTACCATAATGCCAGCCAACCTAGATTAGGGACGACGGGCGGCATGATGGCTTCCTTTGCGTGATTAGATATAGGAATAAGGTCCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAGGCGTCATCCTTTCCCCGAGCTCCTCTGCTCGGCTTATATTCCAGACCTGGGTCAAATTGCATCAGCACGAAAACCTGATCTGTAGGCAATAACGTGAAATCATCTGGAGGATTTGTAATGACGTATCGTTTAGAAGAAGCATCGCACGATGAGCTTGTATCTCGAAACCTGTACAGACCAATGCACAGCATTCCATATGACTTTAATGCTGCGACAAAG]




>consensus_2511#0
AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTACTTAAGTATCGACGAAATTT
TCACCAGTGACACACTATGTAACCAGCGGAAAAAACGGACGTGTTGATGATACGTTTCTA
TGGACGGGGTTTGCGATAATTATTCGTTGAGGGCATCGTACCATAATGCCAGCCAACCTA
GATTAGGGACGACGGGCGGCATGATGGCTTCCTTTGCGTGATTAGATATAGGAATAAGGT
CCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAGGCGTCATCCTTTCCCCGAGCTCCT
CTGCTCGGCTTATATTCCAGACCTGGGTCAAATTGCATCAGCACGAAAACCTGATCTGTA
GGCAATAACGTGAAATCATCTGGAGGATTTGTAATGACGTATCGTTTAGAAGAAGCATCG
CACGATGAGCTTGTATCTCGAAACCTGTACAGACCAATGCACAGCATTCCATATGACTTT
AATGCTGCGACAAAG

consensusID : consensus_2511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence 
                              [TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTCCTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTTCACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAGAAGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAAGCATCGTGACAAATGTGAAGAGAGAAAGGAGGAAGAAGAAGGAGGACGAAAGAGGAATAATCTGCAAGAGGAAGAAAGAAATATAGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGGTAGCTACACGTTAAGGTTTCTAAATCTTCGTAAGACGAAGAAATAATAACGTCTTCGATGGAAGGCTGAATAAGGACTGAACGGGCTTATCT]

[+] EMBL BI508753             [TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTCCTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTTCACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAGAAGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAAGCATCGTGACAAATGTGAAGAGAGAAAGGAGGAAGAAGAAGGAGGACGAAAGAGGAATAATCTGCAAGAGGAAGAAAGAAATATAGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGGTAGCTACACGTTAAGGTTTCTAAATCTTCGTAAGACGAAGAAATAATAACGTCTTCGATGGAAGGCTGAATAAGGACTGAACGGGCTTATCT]




>consensus_2511#1
TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTC
CTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTT
CACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAGA
AGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAAGCATCGTGACAAATGTGAAGAGAG
AAAGGAGGAAGAAGAAGGAGGACGAAAGAGGAATAATCTGCAAGAGGAAGAAAGAAATAT
AGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGGTAGCTAC
ACGTTAAGGTTTCTAAATCTTCGTAAGACGAAGAAATAATAACGTCTTCGATGGAAGGCT
GAATAAGGACTGAACGGGCTTATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2511#0      --------------------AATCTGTTGGACACACTAAAGGAAAACCGAATCAGTTGTA 40
consensus_2511#1      TACATAGTGTGTCACTGGTGAAAATTTCGTCGATACTTAAGTACAACTGATTCGGTTTTC 60
                                          **  * * *   * *** *** * *** ** ** *** * 

consensus_2511#0      CTTAAGTATCGACGAAATTTTCACCAGTGACACACTATGTAAC-CAGCGGAAAAAACGGA 99
consensus_2511#1      CTTTAGTGTGTCCAACAGATTTCTCTGTTCTTTGCTATTTATCGCTGCGTGATTTATTTT 120
                      *** *** *   * * *  **   * **      **** ** * * ***  *   *    

consensus_2511#0      CGTGT--TGATGATACGTTTCTATGGACGGGGTTTGCG-ATAATTATTCGTTGAGGGCAT 156
consensus_2511#1      CACATCGTGTTCGAACATTTTTTACGTTGAGGCTTGTTTGTGATAACGAGTAGAAGAAG- 179
                      *   *  ** *   ** *** *   *  * ** ***    * ** *   ** ** *    

consensus_2511#0      CGTACCATAATGCCAGCCAACCTAGATTAGGGACGACGGGCGGCATGATGGCTTCCTTTG 216
consensus_2511#1      ---AAGGTAAAAAAAAATATTGTAGAGAAAGAAAAAAGAA--GCATCGTGACAAATGTGA 234
                         *   ***    *   *   ****  * * *  * *    ****  ** *     *  

consensus_2511#0      CGTGATTAGATATAGGAATAAGGTCCGTCGGTGAGGGCGCTACACAGCAACAGTCAGNAG 276
consensus_2511#1      AGAGAGAAAGGAGGAAGAAGAAGGAGGACGA-AAGAGGAATAATCTGCAAGAGGAAGAAA 293
                       * **  *   *     *  * *   * **   ** *   **  * **** **  ** * 

consensus_2511#0      GCGTCATCCTTTCCCCGAGCTCCTCTGCTCGGCTTA-TATTCCAGACCTGGGTCAAATTG 335
consensus_2511#1      GAAATATAGAAACGGCAAAAGGGATACCGGGATGTGGTATGATGAAAAACGGTCCGAGGG 353
                      *    **     *  * *         *  *   *  ***     *    ****  *  *

consensus_2511#0      CATCAGCACGAAAACCTGATCTGTAGGCAATAACGTGAAATCATCTGGAGGATTTGTAAT 395
consensus_2511#1      TAGCTACACGTTAA---GGTTTCTAAATCTT--CGTAAGAC-----GAAGAA---ATAAT 400
                       * *  ****  **   * * * **     *  *** * *      * ** *    ****

consensus_2511#0      GACGTATCGTTTAGAAGAAGCATCGCACGATGAGCTTGTATCTCGAAACCTGTACAGACC 455
consensus_2511#1      AACGTCTTCGATGGAAGGCTGAATAAGGACTGAACGGGCTTATCT--------------- 445
                       **** *    * ****    *        *** *  *  * **                

consensus_2511#0      AATGCACAGCATTCCATATGACTTTAATGCTGCGACAAAG 495
consensus_2511#1      ----------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)