cluster # 2552

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2552 cluster # 2552 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2552#0 length = 514 sequences # 1

consensus_2552#1 length = 406 sequences # 1

consensusID : consensus_2552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TATACTAAAAAATATTTTAATTTTTAATATTTTGTATTATAAATATTATAGATATTAAATTATATTTATAAGATTATTAGAGAAGAAACTTGTTACGTTGTCAAGAGGATTATTTTTGTGATAAGAGAATGAAATTATAGGAGGAGATAATGAAAAACAAAGTCAAAAAATATAGAAGAAAAAAAACAAAAAAAAAGTGTAATGATATAATGTAAATGAAATGAAATATAAAAATGTAATGAAATAATGAAATAAAATGTAATTATGAATATGGAATAATGAAATATAATAAATGAAATAAAATGTAAAAATATAATGCAATAATGCCAATAAAATATAATAAATATAATGAAATAAAGTAAACAAAAAAAAAAAACAAAGCTATGCAAAATGGTTNTCTTACTGCTTATAATTATCAGCAGGTGTTGTAATTGCACCCTCCTTCACCTGTTTAGAGTAAAACTAACAGTCAGTCAACCATGTATATCTCAGTGTAAAAGAGATATCATTTATT]

[+] EMBL BI517151             [TATACTAAAAAATATTTTAATTTTTAATATTTTGTATTATAAATATTATAGATATTAAATTATATTTATAAGATTATTAGAGAAGAAACTTGTTACGTTGTCAAGAGGATTATTTTTGTGATAAGAGAATGAAATTATAGGAGGAGATAATGAAAAACAAAGTCAAAAAATATAGAAGAAAAAAAACAAAAAAAAAGTGTAATGATATAATGTAAATGAAATGAAATATAAAAATGTAATGAAATAATGAAATAAAATGTAATTATGAATATGGAATAATGAAATATAATAAATGAAATAAAATGTAAAAATATAATGCAATAATGCCAATAAAATATAATAAATATAATGAAATAAAGTAAACAAAAAAAAAAAACAAAGCTATGCAAAATGGTTNTCTTACTGCTTATAATTATCAGCAGGTGTTGTAATTGCACCCTCCTTCACCTGTTTAGAGTAAAACTAACAGTCAGTCAACCATGTATATCTCAGTGTAAAAGAGATATCATTTATT]




>consensus_2552#0
TATACTAAAAAATATTTTAATTTTTAATATTTTGTATTATAAATATTATAGATATTAAAT
TATATTTATAAGATTATTAGAGAAGAAACTTGTTACGTTGTCAAGAGGATTATTTTTGTG
ATAAGAGAATGAAATTATAGGAGGAGATAATGAAAAACAAAGTCAAAAAATATAGAAGAA
AAAAAACAAAAAAAAAGTGTAATGATATAATGTAAATGAAATGAAATATAAAAATGTAAT
GAAATAATGAAATAAAATGTAATTATGAATATGGAATAATGAAATATAATAAATGAAATA
AAATGTAAAAATATAATGCAATAATGCCAATAAAATATAATAAATATAATGAAATAAAGT
AAACAAAAAAAAAAAACAAAGCTATGCAAAATGGTTNTCTTACTGCTTATAATTATCAGC
AGGTGTTGTAATTGCACCCTCCTTCACCTGTTTAGAGTAAAACTAACAGTCAGTCAACCA
TGTATATCTCAGTGTAAAAGAGATATCATTTATT

consensusID : consensus_2552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [GACGGAAAGGCGATTTGATCAATTAGGGGAAGATTATTTCGTAAAAACAATGTATTTTTAAGGACAGGAAAACATTAGGAGATTGAAGGGCTTTGCGAAAATGGCTTCATCTGGCAGACTGCCATGCCAGTTTGGATAGCTGGCTTAGAAATTGCGAGGCCTATCTCTCTTTGCTGTGAGAGGTTCTTTCCTAACTTTTTTAGTTTTTTTTTTTAGTTTATTCCGCATTTTTTCATCTTTCATATTTTTTTTTTCATTCAAATCTTTTTTTATCTGCATTTCCCGCCACGATCGATGCATAATTTCGGAATGTTGACAATATTCTAATTTTACCTTATCAAGNNNCAATAAATAAATGATATCTCTTTTACACTGAGATATACATGGTTGACTGACTGTTAGTTTT]

[+] EMBL BI512437             [GACGGAAAGGCGATTTGATCAATTAGGGGAAGATTATTTCGTAAAAACAATGTATTTTTAAGGACAGGAAAACATTAGGAGATTGAAGGGCTTTGCGAAAATGGCTTCATCTGGCAGACTGCCATGCCAGTTTGGATAGCTGGCTTAGAAATTGCGAGGCCTATCTCTCTTTGCTGTGAGAGGTTCTTTCCTAACTTTTTTAGTTTTTTTTTTTAGTTTATTCCGCATTTTTTCATCTTTCATATTTTTTTTTTCATTCAAATCTTTTTTTATCTGCATTTCCCGCCACGATCGATGCATAATTTCGGAATGTTGACAATATTCTAATTTTACCTTATCAAGNNNCAATAAATAAATGATATCTCTTTTACACTGAGATATACATGGTTGACTGACTGTTAGTTTT]




>consensus_2552#1
GACGGAAAGGCGATTTGATCAATTAGGGGAAGATTATTTCGTAAAAACAATGTATTTTTA
AGGACAGGAAAACATTAGGAGATTGAAGGGCTTTGCGAAAATGGCTTCATCTGGCAGACT
GCCATGCCAGTTTGGATAGCTGGCTTAGAAATTGCGAGGCCTATCTCTCTTTGCTGTGAG
AGGTTCTTTCCTAACTTTTTTAGTTTTTTTTTTTAGTTTATTCCGCATTTTTTCATCTTT
CATATTTTTTTTTTCATTCAAATCTTTTTTTATCTGCATTTCCCGCCACGATCGATGCAT
AATTTCGGAATGTTGACAATATTCTAATTTTACCTTATCAAGNNNCAATAAATAAATGAT
ATCTCTTTTACACTGAGATATACATGGTTGACTGACTGTTAGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2552#0      TATACTAAAAAATATTTTAATTTTTAATATTTTGTATTATAAATATTATAGATATTAAAT 60
consensus_2552#1      ------------------------------------------------------------
                                                                                  

consensus_2552#0      TATATTTATAAGATTATTAGAGAAGAAACTTGTTACGTTGTCAAGAGGATTATTTTTGTG 120
consensus_2552#1      ---------------GACGGAAAGGCGATTTGATCAATT----AGGGGAAGATTATTTCG 41
                                         ** * *  * *** *   **    ** ***  *** **  *

consensus_2552#0      ATAAGAGAATGAAATTATAGGAGGAGATAATGAAAAACAAAGTCAAAAAATATAGAAGAA 180
consensus_2552#1      TAAAAACAATGTATTTTTAAGGACAGGAAAACATTAGGAGATTGAAGGGCTTTGCGAAAA 101
                        ** * **** * ** ** *   **  **  *  *  * * * **    * *   * **

consensus_2552#0      AAAAAACAAAAAA-AAAGTGTAATGATATAATG--TAAATGAAATGAAATATAAAAATGT 237
consensus_2552#1      TGGCTTCATCTGGCAGACTGCCATGCCAGTTTGGATAGCTGGCTTAGAAATTGCGAGGCC 161
                            **      * * **  ***  *   **  **  **   *  **  *   *    

consensus_2552#0      AATGAAATAATGAAATAAAATGTAATTATGAATATGGAATAATGAAATATAATAAATGAA 297
consensus_2552#1      TATCTCTCTTTGCTGTGAGAGGTTCTTTCCTAACTTTTTTAGTTTTTTTTTTTAGTTTAT 221
                       **       **   * * * **  **    *  *    ** *    * *  **  * * 

consensus_2552#0      ATAAAATGTAAAAATATAATGCAATAATGCCAATAAAATATAATAAATATAATGAAATAA 357
consensus_2552#1      TCCGCATTTTTTCATCTTTC---ATATTTTTTTTTTCATTCAA-ATCTTTTTTTATCTGC 277
                           ** *    ** *      *** *     *   **  ** *  * *  * *  *  

consensus_2552#0      AGTAAACAAAAAAAAAAA-ACAAAGCTATGCAAAATGGTTNTCTTACTGCTTATAA-TTA 415
consensus_2552#1      ATTTCCCGCCACGATCGATGCATAATTTCGGAATGTTGACAATATTCTAATTTTACCTTA 337
                      * *   *   *  *   *  ** *  *  * **  * *      * **  ** **  ***

consensus_2552#0      TCAGCAGGTGTTGTAATTGCACCCTCCTTCACCTGTTTAGAGTAAAACTAACAGTCAGTC 475
consensus_2552#1      TCA--AGNNNCAATAAATAAATGATATCTCTTTTACACTGAGATATAC--ATGGTTGACT 393
                      ***  **      *** *  *   *   **   *     ***  * **  *  **     

consensus_2552#0      AACCATGTATATCTCAGTGTAAAAGAGATATCATTTATT 514
consensus_2552#1      GACTGTTAGTTTT-------------------------- 406
                       **  *   * *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)