|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG]
[+] EMBL BI516235 [CAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCTTGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTTCTCAGTGGGAAAAACCACG]
consensusID : consensus_259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence
[CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA]
[+] EMBL BI507001 [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCAGA]
[+] EMBL BI506741 [CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGATAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGT ]
[+] EMBL BI508845 [ CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCTCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGGACAAACGTGGTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATTGGTCA ]
consensusID : consensus_259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence
[CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT]
[+] EMBL BI508590 [CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGATCAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAGTTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTATGCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGGAACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGAAAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGATTCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTATCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAGAACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_259#1 CGCGAATTTCCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT 60
consensus_259#2 ---------CCCACAGACACCGGCATTGATGGTAATGCATGCGAGGAAACCACAAAGGAT 51
consensus_259#0 ------------------------------------------------------------
consensus_259#1 CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG 120
consensus_259#2 CAGCGATGGGTACTTCGAAAAGCACCAGGCCCATCCCTATCAGAACGCAAAGTATAGTAG 111
consensus_259#0 ----------------------------------------CAGAACGCAAAGTATAGTAG 20
********************
consensus_259#1 TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 180
consensus_259#2 TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 171
consensus_259#0 TTCTAAGGGTGGCTACTCCTCATCAACAACATCATCAGATAGTCGTTACGAAGGACGTAT 80
************************************************************
consensus_259#1 GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 240
consensus_259#2 GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 231
consensus_259#0 GCGAGATTCCCCAAATGGCAACTCTTATAGTCCAGCTGGGGGCTTGGGTATGGGCATGGG 140
************************************************************
consensus_259#1 AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 300
consensus_259#2 AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 291
consensus_259#0 AACAGATAGAGATAGTCCTCGCAGTTACACATCCAAGCCCCTATACAAGAAGGAGAGAGA 200
************************************************************
consensus_259#1 AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAG---------------- 344
consensus_259#2 AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAG---------------- 335
consensus_259#0 AAACAGAGACTACAAGTTATCCTCCTCTAGGGACAAGTATTCAGCTGTAACATGCTTGCT 260
********************************************
consensus_259#1 -------------ATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 391
consensus_259#2 -------------ATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 382
consensus_259#0 TGCATATGTGTAGATTGTGCACGATCCCCAAAAGACAAGAGAAGCCGTGAGAGCAGAGAT 320
***********************************************
consensus_259#1 TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 451
consensus_259#2 TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 442
consensus_259#0 TCAGAACACAGGACCAACCATGATAGGAGTAGTGGAGAAATTTTACATCCTATAAAATTA 380
************************************************************
consensus_259#1 TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 511
consensus_259#2 TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 502
consensus_259#0 TCGTCAAATTCATCAAGAGAATCTTCATCTCAGAGAAAACCATCACACAATTCCTGTCAG 440
************************************************************
consensus_259#1 GACAA-ACGTG-GTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATT 569
consensus_259#2 AACAGTATGTTTAGGACAAACGTGGTGATGAGCGAGGAGGT------------------- 543
consensus_259#0 GACAA-ACGTG-GTGATGAGCGAGGAGGTGCAATGGAACGTTCAGCCAGGTTTGGTGATT 498
*** * ** ** * ** ** * ** * * **
consensus_259#1 GGTCAGA----------------------------------------------------- 576
consensus_259#2 ------------------------------------------------------------
consensus_259#0 GGTCAGAACACATGAGCTCTTCAGGCAAGAAGTATTATTACAACTGTAAAACAGAAGTTT 558
consensus_259#1 -------------------
consensus_259#2 -------------------
consensus_259#0 CTCAGTGGGAAAAACCACG 577
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |