|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 733 fasta sequence
[TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG-TTTTTTTCTCGAGGC-GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC-GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC-AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTTTCACGAAACATGT]
[+] EMBL BI515845 [TTGGCCGCGTTGCTGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGANNNGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGAGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGAGGAGACGTAG ]
[+] EMBL BI513737 [ TGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCTGCTTTCCTCATTCTTA ]
[+] EMBL BI515940 [ GAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGTTAAAAATCGTTAAAAACTCGACGATTCTCGGTACTCTCGTCCCG TTTTTTTCTCGAGGC GCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTC GCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTC AGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACCTNNACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATCTCTCTATCCT ]
[-] EMBL BE844472 [ ttaaAAAACTTGGAGGATTCTCGGTATTCTTGTCCCGTTTTTTTTCTGGAGGCGGCGAGACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAATTCGGGGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAAGCTTTTCGCGAGGAGCGATCGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAGAGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGAGGGTCGAACTTGAATCGAATCCCTCGAAGAGAACAAGAACACAGGTAAACGAGAGGAGACGTAGATCTCGCCGGTCGCGACCTGGACGCGTTGCAACGACGTCCGTCGATCGATATCCCATCGATCGATGTGTGTATCCTGCTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGCCCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAACCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTTAATTTTTTCACGAAACATGT]
consensusID : consensus_263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATTTATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGGGAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTCTTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAACCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAAAAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAACAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT]
[+] EMBL BE844473 [GAGAGAGAGTGTGTGCGTGTGCGTATGTTGAGAAATATAATGCATCAAATATGAAACATTTATCGCCTGATCTCGTGTTCCTCCGCAGTCGATTGAAAATAAAAGAAAGTGAGTATGAGGGAAGAGATATGGTATAGCGTGCCGGTTCATAAACGAGGTTCGTCGTCTCGTAAGTTCTTCTTCGATCAGCGACGGAAAGGAAGAAAATGGATTAGGAGAGGAAAGCGTGTGAGACGAGAACCGCGCGCGTAATTTGACAAAAAGAACGTTAATATAATTATGTACGAGGGGGGGGAAAAAAAAAGAAAAGAACGATGCATGTGTTGAAAGTGAATATCGGAATTAAAAGAAAATAGAGAACAGAGAAAATATGTACTGAAAAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCGGAAGTGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACAAATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAATGTTGATGCGTTCCCGTTCGATGGCCTGGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_263#0 TTGGCCGCGTTGCGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGTAAT 60
consensus_263#1 ------------------GAGAGAGAGTGTGTGC-GTGTGCGTATGTTGAGAAATATAAT 41
* ** *** * * * *** * * ****
consensus_263#0 GTTGATGCGTTCCCGTTTCGATGGCCTGGAATTAATAATTATATATAGTCGAGTGAGT-T 119
consensus_263#1 GCATCAAATATGAAACATTTATCGCCTG-ATCTCGTGTTCCTCCGCAGTCGATTGAAAAT 100
* * * ** ***** * * * * * ****** *** *
consensus_263#0 AAAAATCGTTAAAAACTCG--ACGATTCTCGGTACTCTCGTCCCGTTTTTTTCTCGAGGC 177
consensus_263#1 AAAAGAAAGTGAGTATGAGGGAAGAGATATGGTA-TAGCGTGCCGGTTCATAAACGAGGT 159
**** * * * * * ** **** * *** *** ** * *****
consensus_263#0 GCGA-GACACGTTTTATCACGTTGGAGGGAGAGACGAGAGACGAGAGGATCGTGTGACAA 236
consensus_263#1 TCGTCGTCTCGTAAGTTCTTCTTCGATC-AGCGACGGAAAGGAAGAAAATGGATTAGGAG 218
** * * *** ** ** ** ** **** * *** ** * * *
consensus_263#0 TTCGCGTACCACTCGTTGCGACAGTCAATTAGTTTTAAATTCAGCTTTTCGCGAGGAGCG 296
consensus_263#1 A--GGAAAGCGTGTGAGACGAGAACCG--------CGCGCGTAATTTGACAAAAAGAACG 268
* * * * *** * * * ** * * ** **
consensus_263#0 AT--CGCAATGATGCACGAGCAATGAGCCTGTCCCCAAGGATCGAGGGACAGAGAAGGAG 354
consensus_263#1 TTAATATAATTATGTACGAGGGGGGGGAAAAAAA--AAGAAAAGAACGATGCATGTGTTG 326
* *** *** ***** * * *** * ** ** * * *
consensus_263#0 AGAAAGAAAAAAGGAATGAAAAAAAAGAATGTCGAAGNGGGTCGAACTTGAATCGAATCC 414
consensus_263#1 AAAGTGAATATCGGAATTAAAAGAAA--ATAGAGAACAGAGA-AAATATGTACTGAA--- 380
* * *** * ***** **** *** ** *** * * ** ** * ***
consensus_263#0 CTCGAAGAGAACAAGAACACAGGTAAACGAGNGGAGACGTAGATCTCGCCGGTCGCGACC 474
consensus_263#1 ----AAGAAAAAGAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAAAAACCGAGCG-GAAG 435
**** ** * ** * * *** * *** * * *** ** **
consensus_263#0 TNGACGCGTTGCAACGACGTCCGTCGAT-CGATATCCCATCGATCGATCTCTCTATCCTG 533
consensus_263#1 TGTACGCGTGTGAGCGTAACCAGGCAACGCGATGTTCGAAAAGAAAAACA---------A 486
* ****** * ** * * * * **** * * * * *
consensus_263#0 CTTTCGTCATTGTTAACCTTAAATCCTTTTTCCATAATTTTGCCCTGTCCCATAATATGC 593
consensus_263#1 ATTTGGCCACGTTGCGGGTTGAACAGCGAGCGCAAAAAGCGATCGTGTACGATCCTCTGT 546
*** * ** * ** ** ** ** * *** * ** * **
consensus_263#0 CCTGTATCCTTGTCCTTGTTTCCTCAACGACTGACGATTCCCTCCTTCCCCCTTTGAAAA 653
consensus_263#1 AATGTTGATGCGTTCCCGTT----CGATGGCCTGGAAT---------------------- 580
*** ** * *** * * * * **
consensus_263#0 CCCAGTGAATTTTGTACCGAAATGCGAAACTTGGAAAAGCTACTTTCATATACGGAATTT 713
consensus_263#1 ------------------------------------------------------------
consensus_263#0 AATTTTTTCACGAAACATGT 733
consensus_263#1 --------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |