cluster # 2765

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Apis mellifera
cluster # 2765 cluster # 2765 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2765#0 length = 418 sequences # 1

consensus_2765#1 length = 355 sequences # 1

consensusID : consensus_2765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TGCCCTCTAAAAATATAAATTCCGTGCCGGCACTGCCCAGCAGATTTTTCCTTCGTCTGAAGAACCAGCTACTTTATCTACATTAAATGAAGGTGAACTACGTGCACTATTGGATGAAGCTATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAATCAAGTCTTTTTAAAGAGTTACTTCAAGAAGCAGAAGCTGATGAAACTGAGGAAGGTTGTAGAATAATAACTAATTCACGTTGTTTACCTGGATCAAATCGTAGAAGGCATAAAAGAGATTCTGTATCTGAGAGATTAACACATGGAGGCTCATTACAAAATTTAGCACAACCTATTACTTCAGAATTTGATAGTAGTTTTGCTTATTTAACATCTGGATCTAGCTATACTTACGGAGGAAACAGGAGAAAAAATAAAAAA]

[+] EMBL BI515681             [TGCCCTCTAAAAATATAAATTCCGTGCCGGCACTGCCCAGCAGATTTTTCCTTCGTCTGAAGAACCAGCTACTTTATCTACATTAAATGAAGGTGAACTACGTGCACTATTGGATGAAGCTATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAATCAAGTCTTTTTAAAGAGTTACTTCAAGAAGCAGAAGCTGATGAAACTGAGGAAGGTTGTAGAATAATAACTAATTCACGTTGTTTACCTGGATCAAATCGTAGAAGGCATAAAAGAGATTCTGTATCTGAGAGATTAACACATGGAGGCTCATTACAAAATTTAGCACAACCTATTACTTCAGAATTTGATAGTAGTTTTGCTTATTTAACATCTGGATCTAGCTATACTTACGGAGGAAACAGGAGAAAAAATAAAAAA]




>consensus_2765#0
TGCCCTCTAAAAATATAAATTCCGTGCCGGCACTGCCCAGCAGATTTTTCCTTCGTCTGA
AGAACCAGCTACTTTATCTACATTAAATGAAGGTGAACTACGTGCACTATTGGATGAAGC
TATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAATCAAGTCTTTTTAAAGAGTTACT
TCAAGAAGCAGAAGCTGATGAAACTGAGGAAGGTTGTAGAATAATAACTAATTCACGTTG
TTTACCTGGATCAAATCGTAGAAGGCATAAAAGAGATTCTGTATCTGAGAGATTAACACA
TGGAGGCTCATTACAAAATTTAGCACAACCTATTACTTCAGAATTTGATAGTAGTTTTGC
TTATTTAACATCTGGATCTAGCTATACTTACGGAGGAAACAGGAGAAAAAATAAAAAA

consensusID : consensus_2765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence

                              [ATAACGCTGTCAGTTTCAGTCAAAATGGCCCCAGGGCCAGAACATCGCCAAGAACCAATAGCACCTGACAAAAGTGCTGAAAATAACAATAGTGAGATCTCTAATGAAAGAGATAATATCGAAAATTCAGTGATAGTTGTTGAGACTGTTAGTAACCAGAGTTCGAATACAGAATGTGCTTCAACGAACACTGACATCAATTCAGATTCGACAACCCAAAGTGTATCAACTTGCATTACTTCTGACAATAAACAGGAAGAACCAGCTACTTTATCTACATTAAATGAAGNNNAACTACGTGCACTATTGGATGAAGCTATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAAT]

[+] EMBL BI515378             [ATAACGCTGTCAGTTTCAGTCAAAATGGCCCCAGGGCCAGAACATCGCCAAGAACCAATAGCACCTGACAAAAGTGCTGAAAATAACAATAGTGAGATCTCTAATGAAAGAGATAATATCGAAAATTCAGTGATAGTTGTTGAGACTGTTAGTAACCAGAGTTCGAATACAGAATGTGCTTCAACGAACACTGACATCAATTCAGATTCGACAACCCAAAGTGTATCAACTTGCATTACTTCTGACAATAAACAGGAAGAACCAGCTACTTTATCTACATTAAATGAAGNNNAACTACGTGCACTATTGGATGAAGCTATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAAT]




>consensus_2765#1
ATAACGCTGTCAGTTTCAGTCAAAATGGCCCCAGGGCCAGAACATCGCCAAGAACCAATA
GCACCTGACAAAAGTGCTGAAAATAACAATAGTGAGATCTCTAATGAAAGAGATAATATC
GAAAATTCAGTGATAGTTGTTGAGACTGTTAGTAACCAGAGTTCGAATACAGAATGTGCT
TCAACGAACACTGACATCAATTCAGATTCGACAACCCAAAGTGTATCAACTTGCATTACT
TCTGACAATAAACAGGAAGAACCAGCTACTTTATCTACATTAAATGAAGNNNAACTACGT
GCACTATTGGATGAAGCTATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2765#0      TGCCCTCTAAAAATATAAATTCCGTGCCGGCACTGCCCAGCAGATTTTTCCTTCGTCTGA 60
consensus_2765#1      -------------------------------------------ATAACGCTGTCAGTTTC 17
                                                                 **    *  **   *  

consensus_2765#0      AGAACCAGCTACTTTATCTACATTAAATGAAGGTGAACTACGTGCACTATTGGATGAAGC 120
consensus_2765#1      AGTCAAAATGGCCCCAGGGCCAGAACATCGCCAAGAACCAATAGCACCTGACAAAAGTGC 77
                      **    *    *   *    **  * **      **** *   ****      *    **

consensus_2765#0      TATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAATCAAGTCTTTTTAAAGAGTTACT 180
consensus_2765#1      TGAAAATAACAATAGT----GAGATCTCTAATGAAAG--AGATAATATCGAAAATTCAGT 131
                      *  ** * * **  **     *****   ** ****   *  *  * *  ** * * * *

consensus_2765#0      TCAAGAAGCAGAAGCTGATGAAACTGAGGAAGGTTGTAGAATAATAACTAATTCACGTTG 240
consensus_2765#1      GATAGTTGTTGAGACTGTT---AGTAACCAGAGTTCGAATACAGAATGTGCTTCAA--CG 186
                         **  *  **  *** *   * * *  *  ***  *  * *  *  *  ****    *

consensus_2765#0      TTTACCTGGATCAAATCGTAGAAGGCATAAAAGAGATTCTGTATCTGAGAGATTAACACA 300
consensus_2765#1      AACACTGACATCAATTCAGATTCGACAACCCAAAG----TGTATCAACTTGCATTACTTC 242
                         **    ***** **  *   * **    * **    ******     *  * **   

consensus_2765#0      TGGAGGCTCATTACAAAATTTAGCACAACCTATTACTTCAGAATTTGATAGTAGTTTTGC 360
consensus_2765#1      TGA-----CAATA-AACAGGAAGAACCAGCTACTTTATCTACATTAAAT-GAAGNNNAAC 295
                      **      ** ** ** *   ** ** * *** *   **   ***  ** * **     *

consensus_2765#0      TTATTTAACATCTGGATCTAGCTATACTTACGGAGGAAACAGGAGAAAAAATAAAAAA-- 418
consensus_2765#1      TACGTGCACTATTGGATGAAGCTATAACTTATAAGTGTCCAAAAGATCGTGAAGGAAAAT 355
                      *   *  **   *****  *******  *    **    **  ***      *  ***

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)