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Apis mellifera
cluster # 2787 cluster # 2787       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2787#0 length = 487 sequences # 1  
 consensus_2787#1 length = 392 sequences # 1  
consensusID : consensus_2787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence 
                              [GGTAGTACTACAAATCAAATGGGATCTGGTAGTAATCAAATGGGACCAGGTGGTCCAAGTAATCAGCTTAGTCATGGTGGTGCAACCAATCAAATGGGATTAAGTGGACCAGCTGGACAATCACCTTCTGGTCAAATGGGACCTGGTTCACAAAATCAACAAATTATACCTGGAGGTTCAGCGCCAATTGTACCTAATGCACCTGTAAATCAAATGAGTCAGACTGGACCTGGTCAGATTGGTCCTACTGGACCTGGAGGTCCACCTGGTTCTGGACAGGAAAATTTAAATGCTTTACAAAAAGCTATTGATTCAATGGAAGAAAAAGGACTTCAAGAAGATCCGCGTTATTCACAATTACTTGCATTAAGAGCGCGTCAAGGCAATATGGGAGAAAAACAAACTTTGAGTTCACAACAATTACAACAATTACGNGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAACCATTATCACAAC]

[+] EMBL BI510696             [GGTAGTACTACAAATCAAATGGGATCTGGTAGTAATCAAATGGGACCAGGTGGTCCAAGTAATCAGCTTAGTCATGGTGGTGCAACCAATCAAATGGGATTAAGTGGACCAGCTGGACAATCACCTTCTGGTCAAATGGGACCTGGTTCACAAAATCAACAAATTATACCTGGAGGTTCAGCGCCAATTGTACCTAATGCACCTGTAAATCAAATGAGTCAGACTGGACCTGGTCAGATTGGTCCTACTGGACCTGGAGGTCCACCTGGTTCTGGACAGGAAAATTTAAATGCTTTACAAAAAGCTATTGATTCAATGGAAGAAAAAGGACTTCAAGAAGATCCGCGTTATTCACAATTACTTGCATTAAGAGCGCGTCAAGGCAATATGGGAGAAAAACAAACTTTGAGTTCACAACAATTACAACAATTACGNGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAACCATTATCACAAC]




>consensus_2787#0
GGTAGTACTACAAATCAAATGGGATCTGGTAGTAATCAAATGGGACCAGGTGGTCCAAGT
AATCAGCTTAGTCATGGTGGTGCAACCAATCAAATGGGATTAAGTGGACCAGCTGGACAA
TCACCTTCTGGTCAAATGGGACCTGGTTCACAAAATCAACAAATTATACCTGGAGGTTCA
GCGCCAATTGTACCTAATGCACCTGTAAATCAAATGAGTCAGACTGGACCTGGTCAGATT
GGTCCTACTGGACCTGGAGGTCCACCTGGTTCTGGACAGGAAAATTTAAATGCTTTACAA
AAAGCTATTGATTCAATGGAAGAAAAAGGACTTCAAGAAGATCCGCGTTATTCACAATTA
CTTGCATTAAGAGCGCGTCAAGGCAATATGGGAGAAAAACAAACTTTGAGTTCACAACAA
TTACAACAATTACGNGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAACCATTA
TCACAAC

consensusID : consensus_2787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence 
                              [CAACAATTACAACAATTACGAGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAACCATTATCACAACAACTTGCACTTGCAGTCCAAGGTGGAGCTCCTCCTCCTTCACCTATGGGGCAACGAACTCCTATAGATCCATCTCAAGGGCCTACTGCTGCTACAGGTCCACAAATCACAGGACCAAACGTAATTGGTTCTACAGTTCCTCCAAGACCAAGCTGTCAGACACCACAACAACAACAACAACCTCCTCAACCAGGTGCTAAAACTAATAGGGTGACAAGTGTCACAAAACCAGCTGGTTTAGATCCATTGTTAATTTTACAAGAACGTGAAAACAGAGTGGCAGCACGTATAGCATTACGAATGGAACAATTGAGCAATTT]

[+] EMBL BI516624             [CAACAATTACAACAATTACGAGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAACCATTATCACAACAACTTGCACTTGCAGTCCAAGGTGGAGCTCCTCCTCCTTCACCTATGGGGCAACGAACTCCTATAGATCCATCTCAAGGGCCTACTGCTGCTACAGGTCCACAAATCACAGGACCAAACGTAATTGGTTCTACAGTTCCTCCAAGACCAAGCTGTCAGACACCACAACAACAACAACAACCTCCTCAACCAGGTGCTAAAACTAATAGGGTGACAAGTGTCACAAAACCAGCTGGTTTAGATCCATTGTTAATTTTACAAGAACGTGAAAACAGAGTGGCAGCACGTATAGCATTACGAATGGAACAATTGAGCAATTT]




>consensus_2787#1
CAACAATTACAACAATTACGAGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAA
CCATTATCACAACAACTTGCACTTGCAGTCCAAGGTGGAGCTCCTCCTCCTTCACCTATG
GGGCAACGAACTCCTATAGATCCATCTCAAGGGCCTACTGCTGCTACAGGTCCACAAATC
ACAGGACCAAACGTAATTGGTTCTACAGTTCCTCCAAGACCAAGCTGTCAGACACCACAA
CAACAACAACAACCTCCTCAACCAGGTGCTAAAACTAATAGGGTGACAAGTGTCACAAAA
CCAGCTGGTTTAGATCCATTGTTAATTTTACAAGAACGTGAAAACAGAGTGGCAGCACGT
ATAGCATTACGAATGGAACAATTGAGCAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2787#0      GGTAGTACTACAAATCAAATGGGATCTGGTAGTAATCAAATGGGACCAGGTGGTCCAAGT 60
consensus_2787#1      -----------------------------CAACAATTACA-ACAATTACG-AGTTCAGAT 29
                                                    *  *** * *    *  * *  ** **  *

consensus_2787#0      AATCAGCTTAGTCATGGTGGTGCAACCAATCAAATGGGATTAAGTGGACCAGCTGGACAA 120
consensus_2787#1      AAT-GGCATATCGATTATTA-GCAAGAAATCAACCATTATCA---CAACAACTTGCACTT 84
                      ***  ** **   **  *   ****  ******     ** *     ** *  ** **  

consensus_2787#0      TCACCTTCTGGTCAAATGGGACCTGGTTCACAAAATCAACAAATTATACCTGGAGGTTCA 180
consensus_2787#1      GCAGTCCAAGGTGGAGCTCCTCCTCCTTCACCTATGGGGCAACGAACTCCTATAGATCCA 144
                       **      ***  *      ***  *****  *     ***   *  ***  ** * **

consensus_2787#0      GCGCCAATTGTACCTAATGCACCTGTAAATCAAATGAGTCAGACTGGACCTGGTCAGATT 240
consensus_2787#1      TCTCAA---GGGCCTACTGCTGCTACAGGTCCA-CAAATCACA--GGACCAAACGTAATT 198
                       * * *   *  **** ***  **  *  ** *   * *** *  *****       ***

consensus_2787#0      GGTCCTACTGGACCTGGAGGTCCACCTGGTT---CTGGACAGGAAAATTTAAATGCTTTA 297
consensus_2787#1      GGTTCTACAGTTCCTCCAAGACCAAGCTGTCAGACACCACAACAACAACAACAACCTCCT 258
                      *** **** *  ***  * * ***    **    *   ***  ** *   * *  **   

consensus_2787#0      CAAAAAGCTATTGATTC-AATGGAAGAAAAAGGACTTCAAGAAGATCCGCGTTATTCACA 356
consensus_2787#1      CAACCAGGTGCTAAAACTAATAGGGTGACAAGTGTCACAAAACCAGCTGGTTTAGATCCA 318
                      ***  ** *  * *  * *** *    * ***     *** *  * * *  ***    **

consensus_2787#0      ATTACTTGCATTAAGAGCGCGTCAAGGCAATATGGGAGAAAAACAAACTTTGAGTTCACA 416
consensus_2787#1      -TTGTTAATTTTACAAGAACGTGAAAACAGAGTGGCAGCACGTATAGCATTACGAATGGA 377
                       **  *    ***  **  *** **  **   *** ** *     * * **  *     *

consensus_2787#0      ACAATTACAACAATTACGNGTTCAGATAATGGCATATCGATTATTAGCAAGAAATCAACC 476
consensus_2787#1      ACAATTG-AGCAATTT-------------------------------------------- 392
                      ******  * *****                                             

consensus_2787#0      ATTATCACAAC 487
consensus_2787#1      -----------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)