cluster # 2831

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2831 cluster # 2831 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2831#0 length = 503 sequences # 1

consensus_2831#1 length = 494 sequences # 1

consensusID : consensus_2831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [TTAAATAAAAATTACTTTTGAATCATTGAATTTTAATAATTATGATCGCTATTTTCGAATTTTATACATTAAAAATGATTTACATATTGAATTTATGAAATGCATAAAAAAAGGATAAAAAATTTTAATATTCTTTTTTGAAATTTTACTTTAATTTTTTATGAAGAGATGTGATAAAGGTTATAAGAATTATTATTATTTAAATATAAAAAATAATAATTAATATAAATTGATAATTGATATAAATTTTATATATTTTTAAAGAATTCATATAATAAACAGTGAAGAAACAGTATAACAACGTTCAACATTTTGTATTATTTGAATTTTTTCCAAAGATTTTCCCAAGTGTTACTTTTTCAATAATATGATGTATTAACAATTAAATGAAAAATAATATAATTTGAAACAATAATCATGTCAGAAGTAAATAGAAAACAAGATATAAAGAAAAGAAAAGAAATGTTATATGAAACATTATTCTTGACTGGAATAGCAGGAAT]

[+] EMBL BE844619             [TTAAATAAAAATTACTTTTGAATCATTGAATTTTAATAATTATGATCGCTATTTTCGAATTTTATACATTAAAAATGATTTACATATTGAATTTATGAAATGCATAAAAAAAGGATAAAAAATTTTAATATTCTTTTTTGAAATTTTACTTTAATTTTTTATGAAGAGATGTGATAAAGGTTATAAGAATTATTATTATTTAAATATAAAAAATAATAATTAATATAAATTGATAATTGATATAAATTTTATATATTTTTAAAGAATTCATATAATAAACAGTGAAGAAACAGTATAACAACGTTCAACATTTTGTATTATTTGAATTTTTTCCAAAGATTTTCCCAAGTGTTACTTTTTCAATAATATGATGTATTAACAATTAAATGAAAAATAATATAATTTGAAACAATAATCATGTCAGAAGTAAATAGAAAACAAGATATAAAGAAAAGAAAAGAAATGTTATATGAAACATTATTCTTGACTGGAATAGCAGGAAT]




>consensus_2831#0
TTAAATAAAAATTACTTTTGAATCATTGAATTTTAATAATTATGATCGCTATTTTCGAAT
TTTATACATTAAAAATGATTTACATATTGAATTTATGAAATGCATAAAAAAAGGATAAAA
AATTTTAATATTCTTTTTTGAAATTTTACTTTAATTTTTTATGAAGAGATGTGATAAAGG
TTATAAGAATTATTATTATTTAAATATAAAAAATAATAATTAATATAAATTGATAATTGA
TATAAATTTTATATATTTTTAAAGAATTCATATAATAAACAGTGAAGAAACAGTATAACA
ACGTTCAACATTTTGTATTATTTGAATTTTTTCCAAAGATTTTCCCAAGTGTTACTTTTT
CAATAATATGATGTATTAACAATTAAATGAAAAATAATATAATTTGAAACAATAATCATG
TCAGAAGTAAATAGAAAACAAGATATAAAGAAAAGAAAAGAAATGTTATATGAAACATTA
TTCTTGACTGGAATAGCAGGAAT

consensusID : consensus_2831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [TTAGATATGCGAAGATGAACAAAACAATTATATTCTTTCTTATTTATATATATATAAAATATAAATAAAATTATTTTTCTTTACCCCACTCTTCTGAAACATATTTTAATAAATCTGTAAGATTTTCAAATTCAGTTCTACTTTGAGGAGGATCATTTTTTGGTATTTTTGGTAAAATATTTCCAGCTTTTAATCGAAACTCTTTAGCATTAGTAGCTCCAGATAATTTCCAAATTCCATAAAAAAGTATACTACAACCACTAATTGCCCATGCAGAACCCCATAATAGAGCTCTTGTAGCAAGTGCTGCACCAGATTCTTGAAGACCTTTTCCTCCCATAAATCCAATATCAAAATGTTTATTATCCTTTTTCTTGACTGATGCTAAAGCATTAAAAAAACCGATCATAGCAGAAATTCCTGCTATTCCAGTCAAGAATAATGTTTCATATAACATTTCTTTTCTTTTCTTTATATCTTGTTTTCTATTTACT]

[+] EMBL BI511026             [TTAGATATGCGAAGATGAACAAAACAATTATATTCTTTCTTATTTATATATATATAAAATATAAATAAAATTATTTTTCTTTACCCCACTCTTCTGAAACATATTTTAATAAATCTGTAAGATTTTCAAATTCAGTTCTACTTTGAGGAGGATCATTTTTTGGTATTTTTGGTAAAATATTTCCAGCTTTTAATCGAAACTCTTTAGCATTAGTAGCTCCAGATAATTTCCAAATTCCATAAAAAAGTATACTACAACCACTAATTGCCCATGCAGAACCCCATAATAGAGCTCTTGTAGCAAGTGCTGCACCAGATTCTTGAAGACCTTTTCCTCCCATAAATCCAATATCAAAATGTTTATTATCCTTTTTCTTGACTGATGCTAAAGCATTAAAAAAACCGATCATAGCAGAAATTCCTGCTATTCCAGTCAAGAATAATGTTTCATATAACATTTCTTTTCTTTTCTTTATATCTTGTTTTCTATTTACT]




>consensus_2831#1
TTAGATATGCGAAGATGAACAAAACAATTATATTCTTTCTTATTTATATATATATAAAAT
ATAAATAAAATTATTTTTCTTTACCCCACTCTTCTGAAACATATTTTAATAAATCTGTAA
GATTTTCAAATTCAGTTCTACTTTGAGGAGGATCATTTTTTGGTATTTTTGGTAAAATAT
TTCCAGCTTTTAATCGAAACTCTTTAGCATTAGTAGCTCCAGATAATTTCCAAATTCCAT
AAAAAAGTATACTACAACCACTAATTGCCCATGCAGAACCCCATAATAGAGCTCTTGTAG
CAAGTGCTGCACCAGATTCTTGAAGACCTTTTCCTCCCATAAATCCAATATCAAAATGTT
TATTATCCTTTTTCTTGACTGATGCTAAAGCATTAAAAAAACCGATCATAGCAGAAATTC
CTGCTATTCCAGTCAAGAATAATGTTTCATATAACATTTCTTTTCTTTTCTTTATATCTT
GTTTTCTATTTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2831#0      TTAAATAAAAATTACTTTTGAATCATTGAATTTTAATAATTATGATCGCTATTTTCGAAT 60
consensus_2831#1      TTAGATATGCGAAGAT---GAACAAAACAATTATATTCTTTCTTATTTATATATATATAA 57
                      *** ***        *   ***  *   **** ** *  ** * **   *** *    * 

consensus_2831#0      TTTATACATTAAA--AATGATTTACATATTGAATTTATGAAATGCATAAAAA-AAGGATA 117
consensus_2831#1      AATATAAATAAAATTATTTTTCTTTACCCCACTCTTCTGAAACATATTTTAATAAATCTG 117
                        **** ** ***  * *  * *  *        ** *****   **   ** **   * 

consensus_2831#0      AAAAATTTTAATATTCTTTTTTGAAATTTTACTTTAATTTTTTATGAAGAGATGTGATAA 177
consensus_2831#1      TAAGATTTTCAAATTCAGTTCT--ACTTTGAGGAGGATCATTTTTTGGTATTTTTGGTAA 175
                       ** ***** * ****  ** *  * *** *     **  *** *    *  * ** ***

consensus_2831#0      AGGTTATAAGAATTATTATTATTTAAATATAAAAAATAATAATTAATATAAATTGATAAT 237
consensus_2831#1      AAT--------ATTTCCAGCTTTTAATCGAAACTCTTTAGCATTAGTAGCTCCAGATAAT 227
                      *          ***   *   *****    **    * *  **** **      ******

consensus_2831#0      TGATATAAATTTTATATATTTTTAAAGAATTCATA-TAATAAACAGTGAAGAAACAGTAT 296
consensus_2831#1      T--TCCAAATTCCATAAAAAAGTATACTACAACCACTAATTGCCCATGCAGAA-CCCCAT 284
                      *  *  *****  *** *    ** *  *     * ****   *  ** **** *   **

consensus_2831#0      AACAACGTTCA-ACATTTTGTATTATTTGAATTTTTTCCAAAGATTTTCCCAAGTGTTAC 355
consensus_2831#1      AATAGAGCTCTTGTAGCAAGTGCTGCACCAGATTCTTGAAGACCTTTTCC----TCCCAT 340
                      ** *  * **    *    **  *     *  ** **  * *  ******    *   * 

consensus_2831#0      TTTTTCAATAATATGATGT--ATTAACAATTAAAT-GAAAAATAATATA--ATTTGAAAC 410
consensus_2831#1      AAATCCAATATCAAAATGTTTATTATCCTTTTTCTTGACTGATGCTAAAGCATTAAAAAA 400
                         * *****  *  ****  **** *  **   * **   **  ** *  ***  *** 

consensus_2831#0      AATAATCATGTCAGAAGTAAATAGAAAACAAGATATAAAGAAAAGAAAAGAAATGTTATA 470
consensus_2831#1      ACCGATCATAGCAGAAATTCCTGCTATTCCAGTCAAGAATAATGTTTCATATAACATTTC 460
                      *   *****  ***** *   *   *  * **  *  ** **      * * *   * * 

consensus_2831#0      TGAAACATTATTCTTGACTGGAATAGCAGGAAT- 503
consensus_2831#1      TTTTCTTTTCTTTATATCTTGTTTTCTATTTACT 494
                      *      ** **  *  ** *  *   *   *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)