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Apis mellifera
cluster # 2838 cluster # 2838       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2838#0 length = 461 sequences # 1  
 consensus_2838#1 length = 389 sequences # 1  
consensusID : consensus_2838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence 
                              [GCAGGACAAGTCTTGTTCACGATGTGGCAGCACCAAGAGTTGAGAGACGTTTACAAGAAGCACGGTTGGAAGGAGCAAGATTTTGTAACGAAAACGGTGGCTGCGCGAAATTCAGGGCCTAATTCACCCAACAACGCGAATAGCACGTTGAATCGACCGATGGCGAGTCAAGGGAGCACCAGATACGAGGACAGAACGATCCAGAGAGCGAACATGAACTCGAATAACGTTGGTCGACCTACCATTTATCAGCCTCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAGAAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTGGTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTGGGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGT]

[+] EMBL BI516352             [GCAGGACAAGTCTTGTTCACGATGTGGCAGCACCAAGAGTTGAGAGACGTTTACAAGAAGCACGGTTGGAAGGAGCAAGATTTTGTAACGAAAACGGTGGCTGCGCGAAATTCAGGGCCTAATTCACCCAACAACGCGAATAGCACGTTGAATCGACCGATGGCGAGTCAAGGGAGCACCAGATACGAGGACAGAACGATCCAGAGAGCGAACATGAACTCGAATAACGTTGGTCGACCTACCATTTATCAGCCTCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAGAAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTGGTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTGGGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGT]




>consensus_2838#0
GCAGGACAAGTCTTGTTCACGATGTGGCAGCACCAAGAGTTGAGAGACGTTTACAAGAAG
CACGGTTGGAAGGAGCAAGATTTTGTAACGAAAACGGTGGCTGCGCGAAATTCAGGGCCT
AATTCACCCAACAACGCGAATAGCACGTTGAATCGACCGATGGCGAGTCAAGGGAGCACC
AGATACGAGGACAGAACGATCCAGAGAGCGAACATGAACTCGAATAACGTTGGTCGACCT
ACCATTTATCAGCCTCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAG
AAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTG
GTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTG
GGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGT

consensusID : consensus_2838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence 
                              [GATCCACCCCCGGGTACCCTCAGAGCCAGGGCTCTAAACTAACCGTTGGCTTGTGTGTGTGTTGCAGCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAGAAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTGGTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTGGGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGTGCCACCCAACTCGACGGCCGCCTCGGCGGGCGACTCCTGGGTATAACAGGCGATCCGTGTCCAGGATCCAACCGCCAGGATCCCTCCCTCGAGGCTGCCCCAGAATCGGAACAACG]

[+] EMBL BI515242             [GATCCACCCCCGGGTACCCTCAGAGCCAGGGCTCTAAACTAACCGTTGGCTTGTGTGTGTGTTGCAGCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAGAAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTGGTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTGGGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGTGCCACCCAACTCGACGGCCGCCTCGGCGGGCGACTCCTGGGTATAACAGGCGATCCGTGTCCAGGATCCAACCGCCAGGATCCCTCCCTCGAGGCTGCCCCAGAATCGGAACAACG]




>consensus_2838#1
GATCCACCCCCGGGTACCCTCAGAGCCAGGGCTCTAAACTAACCGTTGGCTTGTGTGTGT
GTTGCAGCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAGAAGAAAAA
GAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTGGTCGGCTC
GGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTGGGCGTCCC
CGACGGCTCGGCCGCGACAGCGACGGTGAACGTGCCACCCAACTCGACGGCCGCCTCGGC
GGGCGACTCCTGGGTATAACAGGCGATCCGTGTCCAGGATCCAACCGCCAGGATCCCTCC
CTCGAGGCTGCCCCAGAATCGGAACAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2838#0      GCAGGACAAGTCTTGTTCACGATGTGGCAGCACCAAGAGTTGAGAGACGTTTACAAGAAG 60
consensus_2838#1      ------------------------------------------------------------
                                                                                  

consensus_2838#0      CACGGTTGGAAGGAGCAAGATTTTGTAACGAAAACGGTGGCTGCGCGAAATTCAGGGCCT 120
consensus_2838#1      ------------------------------------------------------------
                                                                                  

consensus_2838#0      AATTCACCCAACAACGCGAATAGCACGTTGAATCGACCGATGGCGAGTCAAGGGAGCACC 180
consensus_2838#1      ------------------------------------------------------------
                                                                                  

consensus_2838#0      AGATACGAGGACAGAACGATCCAGAGAGCGAACATGAACTCGAATAACGTTGGTCGACCT 240
consensus_2838#1      -GATCCACCCCCGGG--TACCCTCAGAGCCA----GGGCTCTAA-ACTAACCGTTGGCTT 52
                       *** *     * *    * **  ***** *    *  *** ** *      ** * * *

consensus_2838#0      ACCATTTATCAGCCTCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAG 300
consensus_2838#1      GTGTGTGTGTTGCAGCAACCGAAACCCGGTGAGCCGCTCTACGCGCAAGTTAACTTGGAG 112
                           *     **  *********************************************

consensus_2838#0      AAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTG 360
consensus_2838#1      AAGAAAAAGAAGCGGCAGTATGAGCTGGGGGTGGGCCAGGCGCAGGGTCAGGGGGCGGTG 172
                      ************************************************************

consensus_2838#0      GTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTG 420
consensus_2838#1      GTCGGCTCGGGGGTGGCGCCCAATGTGCCCGCGGCCGGCCAATGGGTGGCCGACGGCGTG 232
                      ************************************************************

consensus_2838#0      GGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGT------------------- 461
consensus_2838#1      GGCGTCCCCGACGGCTCGGCCGCGACAGCGACGGTGAACGTGCCACCCAACTCGACGGCC 292
                      *****************************************                   

consensus_2838#0      ------------------------------------------------------------
consensus_2838#1      GCCTCGGCGGGCGACTCCTGGGTATAACAGGCGATCCGTGTCCAGGATCCAACCGCCAGG 352
                                                                                  

consensus_2838#0      -------------------------------------
consensus_2838#1      ATCCCTCCCTCGAGGCTGCCCCAGAATCGGAACAACG 389


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)