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Apis mellifera
cluster # 2845 cluster # 2845       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2845#0 length = 476 sequences # 1  
 consensus_2845#1 length = 366 sequences # 1  
consensusID : consensus_2845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence 
                              [CAAATATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAATCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGCTGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGCTTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACACCACTAAAAGGTATTGGACTTCGACAAGAAGATTATCCTAACTCAATGGCAGAAGTAGGTCCAATATGTAAGAAAGCAGAAGATTTAATACCTCTTTTAAAAGTTTTAATTCAAGATAAAATATCATTACTTAATCTTAATGCAGAAGTAGATATAACACAACTTAATATTTTTTATCAAGAAAATTCAGGTGATATAAGAGCAAGTAAAATAAATTATGAAATGAGAACAGCTCTATTAAAAGTT]

[+] EMBL BI511514             [CAAATATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAATCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGCTGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGCTTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACACCACTAAAAGGTATTGGACTTCGACAAGAAGATTATCCTAACTCAATGGCAGAAGTAGGTCCAATATGTAAGAAAGCAGAAGATTTAATACCTCTTTTAAAAGTTTTAATTCAAGATAAAATATCATTACTTAATCTTAATGCAGAAGTAGATATAACACAACTTAATATTTTTTATCAAGAAAATTCAGGTGATATAAGAGCAAGTAAAATAAATTATGAAATGAGAACAGCTCTATTAAAAGTT]




>consensus_2845#0
CAAATATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACAT
GTAATCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTA
CTGCTGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGC
CAGCTTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACACCACTAAAAG
GTATTGGACTTCGACAAGAAGATTATCCTAACTCAATGGCAGAAGTAGGTCCAATATGTA
AGAAAGCAGAAGATTTAATACCTCTTTTAAAAGTTTTAATTCAAGATAAAATATCATTAC
TTAATCTTAATGCAGAAGTAGATATAACACAACTTAATATTTTTTATCAAGAAAATTCAG
GTGATATAAGAGCAAGTAAAATAAATTATGAAATGAGAACAGCTCTATTAAAAGTT

consensusID : consensus_2845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence 
                              [AGCAAAAGGTATGCTTCATACAATGGGTTTAATAAGTAGACGTAATTTTCGTTCTCAAGAAGATGCAACTGCAATACATCTTATAAAAAATGTTGGTGGAATTTTAATAGCAAAAACAAATATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAATCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGCTGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGCTTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACAAAAAAAAAAAAAAAAAAAGC]

[-] EMBL BI511249             [AGCAAAAGGTATGCTTCATACAATGGGTTTAATAAGTAGACGTAATTTTCGTTCTCAAGAAGATGCAACTGCAATACATCTTATAAAAAATGTTGGTGGAATTTTAATAGCAAAAACAAATATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAATCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGCTGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGCTTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACAAAAAAAAAAAAAAAAAAAGC]




>consensus_2845#1
AGCAAAAGGTATGCTTCATACAATGGGTTTAATAAGTAGACGTAATTTTCGTTCTCAAGA
AGATGCAACTGCAATACATCTTATAAAAAATGTTGGTGGAATTTTAATAGCAAAAACAAA
TATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAA
TCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGC
TGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGC
TTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACAAAAAAAAAAAAAAA
AAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2845#0      ------------------------------------------------------------
consensus_2845#1      AGCAAAAGGTATGCTTCATACAATGGGTTTAATAAGTAGACGTAATTTTCGTTCTCAAGA 60
                                                                                  

consensus_2845#0      --------------------------------------------------------CAAA 4
consensus_2845#1      AGATGCAACTGCAATACATCTTATAAAAAATGTTGGTGGAATTTTAATAGCAAAAACAAA 120
                                                                              ****

consensus_2845#0      TATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAA 64
consensus_2845#1      TATTCCTGAACTAAATTTGTGGACTGAATCAAGAAACAATTTATATGGACAAACATGTAA 180
                      ************************************************************

consensus_2845#0      TCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGC 124
consensus_2845#1      TCCATATGATACCACTAGAAATGTTGGTGGAAGTAGTGGTGGAGAAGCAGCAATTACTGC 240
                      ************************************************************

consensus_2845#0      TGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGC 184
consensus_2845#1      TGCTTGTGGAACTGCATTTTCTGTTGCCAGTGATATTGGTGGTTCTATTAGAATGCCAGC 300
                      ************************************************************

consensus_2845#0      TTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACACCACTAAAAGGTAT 244
consensus_2845#1      TTTCTTCAATGGAGTATTTGGATTTAAACCAACTGCAGGTTTAACAAAAAAAAAAAAAAA 360
                      **********************************************  *  ****   * 

consensus_2845#0      TGGACTTCGACAAGAAGATTATCCTAACTCAATGGCAGAAGTAGGTCCAATATGTAAGAA 304
consensus_2845#1      AAAAGC------------------------------------------------------ 366
                         *                                                        

consensus_2845#0      AGCAGAAGATTTAATACCTCTTTTAAAAGTTTTAATTCAAGATAAAATATCATTACTTAA 364
consensus_2845#1      ------------------------------------------------------------
                                                                                  

consensus_2845#0      TCTTAATGCAGAAGTAGATATAACACAACTTAATATTTTTTATCAAGAAAATTCAGGTGA 424
consensus_2845#1      ------------------------------------------------------------
                                                                                  

consensus_2845#0      TATAAGAGCAAGTAAAATAAATTATGAAATGAGAACAGCTCTATTAAAAGTT 476
consensus_2845#1      ----------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)