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Apis mellifera
cluster # 2846 cluster # 2846       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2846#0 length = 512 sequences # 1  
 consensus_2846#1 length = 183 sequences # 1  
consensusID : consensus_2846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence 
                              [ACTACATAATCAAAAACAATTCAGTAGGAGGAAAAAAGGAATGGACTGGACTCATTGGAGAACTGGTGAACGAAAGAGCAGATATGATTGTTGCTCCTTTAACAATTAATCCAGAACGTGCTGAGTTCATCGAATTTAGTAAGCCATTTAAATATCAAGGCATCACTATTCTTGAAAAGAAGCCATCAAGATCATCAACTTTGGTATCGTTCTTACAACCATTTAGCAATACTCTGTGGATACTGGTAATGGTATCGGTGCACGTAGTGGCTCTAGTTTTGTACCTCCTCGACCGGTTTTCGCCTTTCGGGAGGTTCAAGCTAGCAAACACTGACGGTACCGAAGNGGATGCTCTGAATTTATCTAGTGCTGTCTGGTTCGCTTGGGGAGTTCTTCTTAACAGTGGAATTGGAGAAGGAACTCCACGGAGTTTTTCTGCTCGAGTGTTGGGCATGGTATGGGCAGGTTTTGCGATGATTATCGTTGCTTCTTACACTGCCAATTTAGCTGCA]

[+] EMBL BI516535             [ACTACATAATCAAAAACAATTCAGTAGGAGGAAAAAAGGAATGGACTGGACTCATTGGAGAACTGGTGAACGAAAGAGCAGATATGATTGTTGCTCCTTTAACAATTAATCCAGAACGTGCTGAGTTCATCGAATTTAGTAAGCCATTTAAATATCAAGGCATCACTATTCTTGAAAAGAAGCCATCAAGATCATCAACTTTGGTATCGTTCTTACAACCATTTAGCAATACTCTGTGGATACTGGTAATGGTATCGGTGCACGTAGTGGCTCTAGTTTTGTACCTCCTCGACCGGTTTTCGCCTTTCGGGAGGTTCAAGCTAGCAAACACTGACGGTACCGAAGNGGATGCTCTGAATTTATCTAGTGCTGTCTGGTTCGCTTGGGGAGTTCTTCTTAACAGTGGAATTGGAGAAGGAACTCCACGGAGTTTTTCTGCTCGAGTGTTGGGCATGGTATGGGCAGGTTTTGCGATGATTATCGTTGCTTCTTACACTGCCAATTTAGCTGCA]




>consensus_2846#0
ACTACATAATCAAAAACAATTCAGTAGGAGGAAAAAAGGAATGGACTGGACTCATTGGAG
AACTGGTGAACGAAAGAGCAGATATGATTGTTGCTCCTTTAACAATTAATCCAGAACGTG
CTGAGTTCATCGAATTTAGTAAGCCATTTAAATATCAAGGCATCACTATTCTTGAAAAGA
AGCCATCAAGATCATCAACTTTGGTATCGTTCTTACAACCATTTAGCAATACTCTGTGGA
TACTGGTAATGGTATCGGTGCACGTAGTGGCTCTAGTTTTGTACCTCCTCGACCGGTTTT
CGCCTTTCGGGAGGTTCAAGCTAGCAAACACTGACGGTACCGAAGNGGATGCTCTGAATT
TATCTAGTGCTGTCTGGTTCGCTTGGGGAGTTCTTCTTAACAGTGGAATTGGAGAAGGAA
CTCCACGGAGTTTTTCTGCTCGAGTGTTGGGCATGGTATGGGCAGGTTTTGCGATGATTA
TCGTTGCTTCTTACACTGCCAATTTAGCTGCA

consensusID : consensus_2846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence 
                              [TTCTTACACTGCCAATTTAGCTGCATTTCTTGTATTGGAACGGCCAAAAACGAAATTAACTGGTATCAACGATGCTCGACTTAGAAATACTATGGAGAATCTTACATGTGCCACGGTAAAAGGTTCTGCTGTAGACATGTATTTCCGTCGCCAAGTCGAATTATCCAATATGTATCGTACAAT]

[+] EMBL BI511248             [TTCTTACACTGCCAATTTAGCTGCATTTCTTGTATTGGAACGGCCAAAAACGAAATTAACTGGTATCAACGATGCTCGACTTAGAAATACTATGGAGAATCTTACATGTGCCACGGTAAAAGGTTCTGCTGTAGACATGTATTTCCGTCGCCAAGTCGAATTATCCAATATGTATCGTACAAT]




>consensus_2846#1
TTCTTACACTGCCAATTTAGCTGCATTTCTTGTATTGGAACGGCCAAAAACGAAATTAAC
TGGTATCAACGATGCTCGACTTAGAAATACTATGGAGAATCTTACATGTGCCACGGTAAA
AGGTTCTGCTGTAGACATGTATTTCCGTCGCCAAGTCGAATTATCCAATATGTATCGTAC
AAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2846#0      ACTACATAATCAAAAACAATTCAGTAGGAGGAAAAAAGGAATGGACTGGACTCATTGGAG 60
consensus_2846#1      ------------------------------------------------------------
                                                                                  

consensus_2846#0      AACTGGTGAACGAAAGAGCAGATATGATTGTTGCTCCTTTAACAATTAATCCAGAACGTG 120
consensus_2846#1      ------------------------------------------------------------
                                                                                  

consensus_2846#0      CTGAGTTCATCGAATTTAGTAAGCCATTTAAATATCAAGGCATCACTATTCTTGAAAAGA 180
consensus_2846#1      ---------------TTCTTACACTGCC--AATTTAGCTGCATTTCTTGTATTGGAACG- 42
                                     **  **  *      *** *    ****  **  * *** ** * 

consensus_2846#0      AGCCATCAAGATCATCAACTTTGGTATCGTTCTTACAACCATTTAGCAATACTCTGTGGA 240
consensus_2846#1      -GCCAAAAACGAAATTAACT--GGTATCAACGATGCT-CGACTTAGAAATACTATGGAGA 98
                       ****  **    ** ****  ******     * *  * * **** ****** **  **

consensus_2846#0      TACTGGTAATGGTATCGGTGCACGTAGTGGCTCTAGTTTTGTACCTCCTCGACCGGTTTT 300
consensus_2846#1      ATCTTACATGTGCCACGGTAAAAGGTTCTGCTGTAGACATGTATTTCCGTCGCCAAGTCG 158
                        **   *   *   ****  * *     *** ***   ****  ***    **   *  

consensus_2846#0      CGCCTTTCGGGAGGTTCAAGCTAGCAAACACTGACGGTACCGAAGNGGATGCTCTGAATT 360
consensus_2846#1      AATTATCCAATATGTATCGTACAAT----------------------------------- 183
                           * *   * **       *                                     

consensus_2846#0      TATCTAGTGCTGTCTGGTTCGCTTGGGGAGTTCTTCTTAACAGTGGAATTGGAGAAGGAA 420
consensus_2846#1      ------------------------------------------------------------
                                                                                  

consensus_2846#0      CTCCACGGAGTTTTTCTGCTCGAGTGTTGGGCATGGTATGGGCAGGTTTTGCGATGATTA 480
consensus_2846#1      ------------------------------------------------------------
                                                                                  

consensus_2846#0      TCGTTGCTTCTTACACTGCCAATTTAGCTGCA 512
consensus_2846#1      --------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)