cluster # 2849

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Apis mellifera
cluster # 2849 cluster # 2849 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2849#0 length = 503 sequences # 1

consensus_2849#1 length = 454 sequences # 1

consensusID : consensus_2849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [AACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAACAGTTCGTATCCACAGGGGAACGAGACGAAGACGATAAGATGCCAAAAGACCGAGTCCCCTCCCCAGAAACAAATAGGTATAATCAGACCTCTCGTGTCCACCAAGACTCAACATCCTCAGCAAAATCTGAGCAATCGAGAGTTGGAGAAGAATCTGATCAATCGAGTGAAGAGCATAGAACAACCAACCAAGGTAGTTGTTAGCTTGAAGAGCGCGGACGAAATTCAACCTGCTAAAAAGTCGAATTCGGGCGGCGCCGGATTATGGGAGACGAAACCTTGGAACCAGCAAAACAATACCATGGTGTTCAATTTCAGTAACCGGAAGGAGGTGCCCGATTATATCGAGAACGATGGACTCATCATTAAGAAGAAACGGGAGAAACCGAAGGTCGGCGACGGTGGTATCATAGTGTTGGACGCCACGTTGGACGCGTCGACGACGGACG]

[+] EMBL BI513344             [AACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAACAGTTCGTATCCACAGGGGAACGAGACGAAGACGATAAGATGCCAAAAGACCGAGTCCCCTCCCCAGAAACAAATAGGTATAATCAGACCTCTCGTGTCCACCAAGACTCAACATCCTCAGCAAAATCTGAGCAATCGAGAGTTGGAGAAGAATCTGATCAATCGAGTGAAGAGCATAGAACAACCAACCAAGGTAGTTGTTAGCTTGAAGAGCGCGGACGAAATTCAACCTGCTAAAAAGTCGAATTCGGGCGGCGCCGGATTATGGGAGACGAAACCTTGGAACCAGCAAAACAATACCATGGTGTTCAATTTCAGTAACCGGAAGGAGGTGCCCGATTATATCGAGAACGATGGACTCATCATTAAGAAGAAACGGGAGAAACCGAAGGTCGGCGACGGTGGTATCATAGTGTTGGACGCCACGTTGGACGCGTCGACGACGGACG]




>consensus_2849#0
AACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAACAGTTC
GTATCCACAGGGGAACGAGACGAAGACGATAAGATGCCAAAAGACCGAGTCCCCTCCCCA
GAAACAAATAGGTATAATCAGACCTCTCGTGTCCACCAAGACTCAACATCCTCAGCAAAA
TCTGAGCAATCGAGAGTTGGAGAAGAATCTGATCAATCGAGTGAAGAGCATAGAACAACC
AACCAAGGTAGTTGTTAGCTTGAAGAGCGCGGACGAAATTCAACCTGCTAAAAAGTCGAA
TTCGGGCGGCGCCGGATTATGGGAGACGAAACCTTGGAACCAGCAAAACAATACCATGGT
GTTCAATTTCAGTAACCGGAAGGAGGTGCCCGATTATATCGAGAACGATGGACTCATCAT
TAAGAAGAAACGGGAGAAACCGAAGGTCGGCGACGGTGGTATCATAGTGTTGGACGCCAC
GTTGGACGCGTCGACGACGGACG

consensusID : consensus_2849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [GAGCACGAGCGAGAGGAAACGGATGGGCCGAAGACGATCTCGAAAACGGCGTTGGAGAATATCGCGAGAACCGGGGTCACCATGCAATTTTGCTTCAGCGACAAACCGATATCCAACAAGAGTTACTTGCCTGGATTCAAACAGAATGGGCAGAAACCGATGGACGAGCAAAATCAACACACGGACACACGAACAGAAACGAAGTTGCCGTCCCTAGAATCCCGGGGCAAGTCGTTTTTGTCCGGAGGTTCCGCGAACGTTGTAACGGATCAAGAGACAGTGTCCAGGCTGCAAGAGAGATTGGAGTTGGACAACAAGAACGATAGGAAGAACGAGGATGTTAAGGAGGAGACAGAGACCAAAGCGAACGTTGAAACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAACAGTTCGTATCCACAGGGGAACGAGA]

[+] EMBL BI514603             [GAGCACGAGCGAGAGGAAACGGATGGGCCGAAGACGATCTCGAAAACGGCGTTGGAGAATATCGCGAGAACCGGGGTCACCATGCAATTTTGCTTCAGCGACAAACCGATATCCAACAAGAGTTACTTGCCTGGATTCAAACAGAATGGGCAGAAACCGATGGACGAGCAAAATCAACACACGGACACACGAACAGAAACGAAGTTGCCGTCCCTAGAATCCCGGGGCAAGTCGTTTTTGTCCGGAGGTTCCGCGAACGTTGTAACGGATCAAGAGACAGTGTCCAGGCTGCAAGAGAGATTGGAGTTGGACAACAAGAACGATAGGAAGAACGAGGATGTTAAGGAGGAGACAGAGACCAAAGCGAACGTTGAAACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAACAGTTCGTATCCACAGGGGAACGAGA]




>consensus_2849#1
GAGCACGAGCGAGAGGAAACGGATGGGCCGAAGACGATCTCGAAAACGGCGTTGGAGAAT
ATCGCGAGAACCGGGGTCACCATGCAATTTTGCTTCAGCGACAAACCGATATCCAACAAG
AGTTACTTGCCTGGATTCAAACAGAATGGGCAGAAACCGATGGACGAGCAAAATCAACAC
ACGGACACACGAACAGAAACGAAGTTGCCGTCCCTAGAATCCCGGGGCAAGTCGTTTTTG
TCCGGAGGTTCCGCGAACGTTGTAACGGATCAAGAGACAGTGTCCAGGCTGCAAGAGAGA
TTGGAGTTGGACAACAAGAACGATAGGAAGAACGAGGATGTTAAGGAGGAGACAGAGACC
AAAGCGAACGTTGAAACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCC
TCGACCAACAGTTCGTATCCACAGGGGAACGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2849#0      AACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAACAGTTC 60
consensus_2849#1      ------------------------------GAGCACGAGCGAGAGGA-AACGGATGGGCC 29
                                                    * **  ** * *       **  *  *  *

consensus_2849#0      GTATCCACAGGGGAACGAGACGAAGACGATAAGATGCCAAAAGACCGAGTCCCCTCCCCA 120
consensus_2849#1      GAAGACGATCTCGAAAACGGCGTTG--GAGAATATCGCGAGAACCGGGGTCACC------ 81
                      * *  *      ***   * **  *  ** ** **  * * *  * * *** **      

consensus_2849#0      GAAACAAATAGGTATAATCAGACCTCTCGTGTCCACCAAGACTCAACATCCTCAGCAAAA 180
consensus_2849#1      -ATGCAATTTTGCTTCAGCGACAAACCGATATCCAACAAGAGTTACTTGCCTGGATTCAA 140
                       *  *** *  *  * * *      *   * **** ***** * *    ***      **

consensus_2849#0      TCTGAGCAATCGAGAGTTGGAGAAGAATCTGATCAATCGAGTGAAGAGCATAGAACAACC 240
consensus_2849#1      ACAGAATGGGCAGAAACCGATGGACGAGCAAA---ATCAACACACGGACACACGAACAGA 197
                       * **     *   *   *  * *  * *  *   *** *   * *  ** *  *  *  

consensus_2849#0      AACCAAGGTAGTTGTTAGCTTGAAGAGCGCGGACGAAATTCAACCTGCTAAAAAGTCGAA 300
consensus_2849#1      AACGAAG----TTGCCGTCCCTAGAATCCCGGGGCAAGTCGTTTTTGTCCGGAGGTTCCG 253
                      *** ***    ***    *   *  * * ***   ** *      **     * **    

consensus_2849#0      TTCGGGCGGCGCCGGATTATGGGAGACGAAACCTTGGAACCAGCAAAACAATACCATGGT 360
consensus_2849#1      CGAACGTTGTAACGGATCA--AGAGACAGTGTCCAGG---CTGCAAGAGAGATTGGAGTT 308
                           *  *   ***** *   *****     *  **   * **** * *       * *

consensus_2849#0      GTTCAATTTCAGTAACCGGAAGGAGGTGCCCGATTATATCGAGAACGA---TGGACTCAT 417
consensus_2849#1      GGACAACAAGAACGATAGGAAGAACGAGGATGTTAAGGAGGAGACAGAGACCAAAGCGAA 368
                      *  ***    *   *  ***** * * *   * * *    ****  **      *   * 

consensus_2849#0      CATTAAGAAGAAACGGGAGAAACCGAAGGTCGGCGACGGTGGTATCATAGTGTTGGACGC 477
consensus_2849#1      CGTTGAAACGAAACCAATCGGTGCTATCTGCAGCCTGGGCCTGATCAAATCCTCGACCAA 428
                      * ** * * *****         * *    * **   **    **** *   * *  *  

consensus_2849#0      CACGTTGGACGCGTCGACGACGGACG 503
consensus_2849#1      CAGTTCGTATCCACAGGGGAACGAGA 454
                      **  * * *  *   *  **  **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)