cluster # 2862

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2862 cluster # 2862 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2862#0 length = 501 sequences # 1

consensus_2862#1 length = 448 sequences # 1

consensusID : consensus_2862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [TCCATATATGATTTTCTTAGTTTTCACGAAGACAACATTTCTTGCTTCGTCAACGATAATATAATACTAAACAATGAATGGCTATTTAGTCGTTGAGAAGATAGTAATATCAGCAAGAATGGAACAAATTTACACAGGACTAGCACATATCTGATTAAGAAGCGGTCTGCCACAAACACGATGCGTCCTGTATCTTCGATGAACATGGAACGAGTTGATGAAATACTCTCAAATATTTTTTTTCCTCGTTTCAGGATTTCCAGCGAATATATGAGAATATTCTGTTCTTGCTGCTAGTGCGGCTAAAACGAATTCAAAATTCACTGTCGTATCGGCAAAATCAATTTTTGCATTCTGAAAAATTTTATCAGATTCTTCCAGTGGCACATTTAGCGAGAGTTTTAAAGCTTTTCTTAATTCCATTTTATTAATACACGATAATGATTTTGTGCCACATACTTCAAACGCTGTTTCAACTTTGTCTAGCTCCGAATTTGCGTT]

[+] EMBL BI515562             [TCCATATATGATTTTCTTAGTTTTCACGAAGACAACATTTCTTGCTTCGTCAACGATAATATAATACTAAACAATGAATGGCTATTTAGTCGTTGAGAAGATAGTAATATCAGCAAGAATGGAACAAATTTACACAGGACTAGCACATATCTGATTAAGAAGCGGTCTGCCACAAACACGATGCGTCCTGTATCTTCGATGAACATGGAACGAGTTGATGAAATACTCTCAAATATTTTTTTTCCTCGTTTCAGGATTTCCAGCGAATATATGAGAATATTCTGTTCTTGCTGCTAGTGCGGCTAAAACGAATTCAAAATTCACTGTCGTATCGGCAAAATCAATTTTTGCATTCTGAAAAATTTTATCAGATTCTTCCAGTGGCACATTTAGCGAGAGTTTTAAAGCTTTTCTTAATTCCATTTTATTAATACACGATAATGATTTTGTGCCACATACTTCAAACGCTGTTTCAACTTTGTCTAGCTCCGAATTTGCGTT]




>consensus_2862#0
TCCATATATGATTTTCTTAGTTTTCACGAAGACAACATTTCTTGCTTCGTCAACGATAAT
ATAATACTAAACAATGAATGGCTATTTAGTCGTTGAGAAGATAGTAATATCAGCAAGAAT
GGAACAAATTTACACAGGACTAGCACATATCTGATTAAGAAGCGGTCTGCCACAAACACG
ATGCGTCCTGTATCTTCGATGAACATGGAACGAGTTGATGAAATACTCTCAAATATTTTT
TTTCCTCGTTTCAGGATTTCCAGCGAATATATGAGAATATTCTGTTCTTGCTGCTAGTGC
GGCTAAAACGAATTCAAAATTCACTGTCGTATCGGCAAAATCAATTTTTGCATTCTGAAA
AATTTTATCAGATTCTTCCAGTGGCACATTTAGCGAGAGTTTTAAAGCTTTTCTTAATTC
CATTTTATTAATACACGATAATGATTTTGTGCCACATACTTCAAACGCTGTTTCAACTTT
GTCTAGCTCCGAATTTGCGTT

consensusID : consensus_2862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AAAGATTTAGCGAAGAAGTTAATTTACATGAATTTGCGCAAATTCTTAGAATAGATGCAAAAGAATCTGCTACTCAACAACTGTTTCGAATACATGATAGAGTCTGTATCATTTATTTTTTATTCATTACAATATTTATATCATGGTATACTTGTTTTGTCAAATATCTAGTATCTTTTATTATTTTCATTTTCTCTCAGATTCTAATATCAAAGATAATATTAAAATAGNCTAAGTTTATTATGTTAATAGTAATCGGTTAACATTTCTGCGCGTGGATATAAATAATGCATATATATTACACGCGAAAAATTAGTTTATTGATACAATGATTATTGCAGCAAGGAAATGGTAAAATAGATTTGGAAGAATATTTATTCACGGTACTAGCNNCGACAAACGCAAATTCGGAGCTAGACAAAGTTGAAACAGCGTTTGAAGTATGTGG]

[+] EMBL BI508486             [AAAGATTTAGCGAAGAAGTTAATTTACATGAATTTGCGCAAATTCTTAGAATAGATGCAAAAGAATCTGCTACTCAACAACTGTTTCGAATACATGATAGAGTCTGTATCATTTATTTTTTATTCATTACAATATTTATATCATGGTATACTTGTTTTGTCAAATATCTAGTATCTTTTATTATTTTCATTTTCTCTCAGATTCTAATATCAAAGATAATATTAAAATAGNCTAAGTTTATTATGTTAATAGTAATCGGTTAACATTTCTGCGCGTGGATATAAATAATGCATATATATTACACGCGAAAAATTAGTTTATTGATACAATGATTATTGCAGCAAGGAAATGGTAAAATAGATTTGGAAGAATATTTATTCACGGTACTAGCNNCGACAAACGCAAATTCGGAGCTAGACAAAGTTGAAACAGCGTTTGAAGTATGTGG]




>consensus_2862#1
AAAGATTTAGCGAAGAAGTTAATTTACATGAATTTGCGCAAATTCTTAGAATAGATGCAA
AAGAATCTGCTACTCAACAACTGTTTCGAATACATGATAGAGTCTGTATCATTTATTTTT
TATTCATTACAATATTTATATCATGGTATACTTGTTTTGTCAAATATCTAGTATCTTTTA
TTATTTTCATTTTCTCTCAGATTCTAATATCAAAGATAATATTAAAATAGNCTAAGTTTA
TTATGTTAATAGTAATCGGTTAACATTTCTGCGCGTGGATATAAATAATGCATATATATT
ACACGCGAAAAATTAGTTTATTGATACAATGATTATTGCAGCAAGGAAATGGTAAAATAG
ATTTGGAAGAATATTTATTCACGGTACTAGCNNCGACAAACGCAAATTCGGAGCTAGACA
AAGTTGAAACAGCGTTTGAAGTATGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2862#0      TCCATATATGATTTTCTTAGTTTTCACGAAGACAACATTTCTTGCTTCGTCAACGATAAT 60
consensus_2862#1      ----------------AAAGATTTAGCGAAGAAGTTAATTTACATGAATTTGCGCAAATT 44
                                        ** ***  ******    * **         *     * * *

consensus_2862#0      ATAATACTAAACAATGAATGGCTATTTAGTCGTTGAGAAGATAGTAATATCAGCAAGAAT 120
consensus_2862#1      CTTAGAATAGATGCAAAAGAATCTGCTACTCAACAACTGTTTCG-AATACATGATAGAGT 103
                       * * * ** *     **        ** **    *     * * ****   *  *** *

consensus_2862#0      GGAACAAATTTACACAGGACTAGCACATATCTGATTAAGAAGCGGTCTGCCACAAACACG 180
consensus_2862#1      CTGTATCATTTATTTTTTATT--CATTACAATATTTATATCATGGTATACTTGTTTTGTC 161
                             *****      * *  **      *  ***      *** * *          

consensus_2862#0      ATGCGTCCTGTATCTTCGATGAACATGGAACGAGTTGATGAAATACTCTCAAATATTTTT 240
consensus_2862#1      AAATATCTAGTATCTTTTATTATTTTCATTTTCTCTCAGATTCTAATATCAAAGATAATA 221
                      *    **  *******  ** *   *         * *     ** * ***** **  * 

consensus_2862#0      TTTCCTCGTTTCAGGATTTCCAGCGAATATATGAGAATATTCTGTTCTTGCTGCTA-GTG 299
consensus_2862#1      TTAAAATAGNCTAAGTTTATTA-----TGT-TAATAGTAATCGGTTAACATTTCTGCGCG 275
                      **          * * **   *     * * * * * ** ** ***     * **  * *

consensus_2862#0      CGGCTAAAACGAATTCAAAATTCACTGTCGTATCGGCAAAATCAATTTTTGCATTCTGAA 359
consensus_2862#1      TGGATATAAATAATGCATAT----ATATTACACGCGAAAAATTAGTTTATTGATAC--AA 329
                       ** ** **  *** ** *      * *   *   * ***** * *** *  ** *  **

consensus_2862#0      AAATTTTATCAGATTCTTCCAGTGGCACATTTAGCGAGAGTTTTAAAGCTTTTCTTAATT 419
consensus_2862#1      TGATTATTGCAG-------CAAGGAAATGGTAAAATAGA-TTTGGAAGAATATTTATTCA 381
                        *** *  ***       **  *  *   * *   *** ***  ***  * * *     

consensus_2862#0      CCATTTTATTAATACACGATAATGATTTTGTGCCA--CATACTTCAAACGCTGTTTCAAC 477
consensus_2862#1      CGGTACTAGCNNCGACAAACGCAAATTCGGAGCTAGACAAAGTTGAAACAGCGTTTGAAG 441
                      *  *  **          *     ***  * ** *  ** * ** ****   **** ** 

consensus_2862#0      TTTGTCTAGCTCCGAATTTGCGTT 501
consensus_2862#1      TATGTGG----------------- 448
                      * ***

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)