cluster # 2943

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 2943 cluster # 2943 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2943#0 length = 524 sequences # 1

consensus_2943#1 length = 509 sequences # 1

consensusID : consensus_2943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [GCAGTGTGATACGAAATACTAGAACATCATTTTATAATCCGTGTAATAAAAATTATAATCTAGTATGTGTACTGCATTAGATCAATGGTTTTATATATATATCTATATAGTTTATCGTGCTTATTTAACGAACGCTTTGTAAAAAAGTGTTTTTTTTTTTTGTATAAGCATTCACATTATTAAAAACATTATTATCAATTAATTTGAAAATTTTATTTCTATATTATATTATCGCAGGTATCGAGTATAATTACGCGAACACGATGCGGCATCTTTTTCAATATTATAAAATAATTATATATGTATAATAATTACCTATAATAGATTCAATAATAAATATTCATTTAAAATATCTCTTAAAAGAGTTTTTTCTTTACAGCGGTATATCTTTCCATATAGTTATCATAACCATCAAGATTAGCAAATTGTTTTATCTCAAATAAATTTCCTTCAACAGACAGGACTGAAATTTTAGAATTTTTCAAAATTTTACTAGGTATTGCATTCAGTTGTAAACAATTTTC]

[+] EMBL BE844257             [GCAGTGTGATACGAAATACTAGAACATCATTTTATAATCCGTGTAATAAAAATTATAATCTAGTATGTGTACTGCATTAGATCAATGGTTTTATATATATATCTATATAGTTTATCGTGCTTATTTAACGAACGCTTTGTAAAAAAGTGTTTTTTTTTTTTGTATAAGCATTCACATTATTAAAAACATTATTATCAATTAATTTGAAAATTTTATTTCTATATTATATTATCGCAGGTATCGAGTATAATTACGCGAACACGATGCGGCATCTTTTTCAATATTATAAAATAATTATATATGTATAATAATTACCTATAATAGATTCAATAATAAATATTCATTTAAAATATCTCTTAAAAGAGTTTTTTCTTTACAGCGGTATATCTTTCCATATAGTTATCATAACCATCAAGATTAGCAAATTGTTTTATCTCAAATAAATTTCCTTCAACAGACAGGACTGAAATTTTAGAATTTTTCAAAATTTTACTAGGTATTGCATTCAGTTGTAAACAATTTTC]




>consensus_2943#0
GCAGTGTGATACGAAATACTAGAACATCATTTTATAATCCGTGTAATAAAAATTATAATC
TAGTATGTGTACTGCATTAGATCAATGGTTTTATATATATATCTATATAGTTTATCGTGC
TTATTTAACGAACGCTTTGTAAAAAAGTGTTTTTTTTTTTTGTATAAGCATTCACATTAT
TAAAAACATTATTATCAATTAATTTGAAAATTTTATTTCTATATTATATTATCGCAGGTA
TCGAGTATAATTACGCGAACACGATGCGGCATCTTTTTCAATATTATAAAATAATTATAT
ATGTATAATAATTACCTATAATAGATTCAATAATAAATATTCATTTAAAATATCTCTTAA
AAGAGTTTTTTCTTTACAGCGGTATATCTTTCCATATAGTTATCATAACCATCAAGATTA
GCAAATTGTTTTATCTCAAATAAATTTCCTTCAACAGACAGGACTGAAATTTTAGAATTT
TTCAAAATTTTACTAGGTATTGCATTCAGTTGTAAACAATTTTC

consensusID : consensus_2943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [TATTAGCTTTGGCACCATTGCTACGTACATTGGATTTATCGGAAAATGAATTTGTTCATATTCCCGATAATATTGGTAATTTTACGTTATTAAAGCTATTGAATGTTAATCATAACAAATTGACAACTTTACCCGAAGCACTTGGAGCATTGACAAAATTAGAATGTTTAAATGCAAGTTCGAATCAAATAAAAACTATCCCATGGTCATTGTCAAAACTAACACGATTGAAACAAGTCAACTTATCTGATAATCGTATAACCGAATTTCCTCCTATGTTTTGTGATTTAAAATTTCTGGATGTGTTAGATTTATCGAAGAATCGAATTACGACAATCCCTGATGCGGCTGGAGCGTTACATATAGTTGAACTTAACCTCAATCAAAATCAGATATCAACTATATCTGAGAAATTGGCGGAATGTTCGCGCCTAAAAACATTAAGACTTGAAGAAAATTGTTTACAACTGAATGCAATACCTAGTAAAATTTTGAAAAATTCTAAAATT]

[+] EMBL BI516269             [TATTAGCTTTGGCACCATTGCTACGTACATTGGATTTATCGGAAAATGAATTTGTTCATATTCCCGATAATATTGGTAATTTTACGTTATTAAAGCTATTGAATGTTAATCATAACAAATTGACAACTTTACCCGAAGCACTTGGAGCATTGACAAAATTAGAATGTTTAAATGCAAGTTCGAATCAAATAAAAACTATCCCATGGTCATTGTCAAAACTAACACGATTGAAACAAGTCAACTTATCTGATAATCGTATAACCGAATTTCCTCCTATGTTTTGTGATTTAAAATTTCTGGATGTGTTAGATTTATCGAAGAATCGAATTACGACAATCCCTGATGCGGCTGGAGCGTTACATATAGTTGAACTTAACCTCAATCAAAATCAGATATCAACTATATCTGAGAAATTGGCGGAATGTTCGCGCCTAAAAACATTAAGACTTGAAGAAAATTGTTTACAACTGAATGCAATACCTAGTAAAATTTTGAAAAATTCTAAAATT]




>consensus_2943#1
TATTAGCTTTGGCACCATTGCTACGTACATTGGATTTATCGGAAAATGAATTTGTTCATA
TTCCCGATAATATTGGTAATTTTACGTTATTAAAGCTATTGAATGTTAATCATAACAAAT
TGACAACTTTACCCGAAGCACTTGGAGCATTGACAAAATTAGAATGTTTAAATGCAAGTT
CGAATCAAATAAAAACTATCCCATGGTCATTGTCAAAACTAACACGATTGAAACAAGTCA
ACTTATCTGATAATCGTATAACCGAATTTCCTCCTATGTTTTGTGATTTAAAATTTCTGG
ATGTGTTAGATTTATCGAAGAATCGAATTACGACAATCCCTGATGCGGCTGGAGCGTTAC
ATATAGTTGAACTTAACCTCAATCAAAATCAGATATCAACTATATCTGAGAAATTGGCGG
AATGTTCGCGCCTAAAAACATTAAGACTTGAAGAAAATTGTTTACAACTGAATGCAATAC
CTAGTAAAATTTTGAAAAATTCTAAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2943#0      GCAGTGTGATACGAAATACTAGAACATCA-TTTTATAATCCGTGTAATAAAAATTATAAT 59
consensus_2943#1      ------------------------TATTAGCTTTGGCACCATTGCTACGTACATTGGATT 36
                                               ** *  ***   * *  **  *   * ***  * *

consensus_2943#0      C--TAGTATGTGTACTGCATTAGATCAATGGTTTTATATATATATCTATATAGTTTATCG 117
consensus_2943#1      TATCGGAAAATGAATTTGTTCATATTCCCGATAATATTGGTAATTTTACGT----TATTA 92
                           * *  ** * *   * * **    * *  ***   **  * **  *    ***  

consensus_2943#0      TGCTTATTTAACGAACGCTTTGTAAAAAAGTGTTTTTTTTTTTTGTATAAGCATTCACAT 177
consensus_2943#1      AAGCTATTGAATGTTAA--TCATAACAAATTGACAACTTTACCCG---AAGCACTTGGAG 147
                          **** ** *      *  *** *** **     ***    *   ***** *   * 

consensus_2943#0      TATTAAAAACATTATTATCAATTAATTTGAAAATTTTATTTCTATATTATATTATCGCAG 237
consensus_2943#1      CATTGACAAAATTAGAAT--GTTTAAATGCAAGTTCGAATCAAATAA-AAACTATCCCAT 204
                       *** * ** ****  **   ** *  ** ** **  * *   ***  * * **** ** 

consensus_2943#0      G--TATCGAGTATAATTACGCGAACACGATGCGGCATCTTTTTCAATATTATAAAATAAT 295
consensus_2943#1      GGTCATTGTCAAAACTAACACGATTGAAACAAGTCAACTTATCTGATA--ATCGTATAAC 262
                      *   ** *   * * * ** ***     *   * ** *** *   ***  **   **** 

consensus_2943#0      TATATATG-TATAATAATTACCTATAATAGATTCAATAATAAATATTCATTTAAAATATC 354
consensus_2943#1      CGAATTTCCTCCTATGTTTTGTGATTTAAAATTTCTGGATGTGT-TAGATTTATCGAAGA 321
                         ** *  *   **  **    **   * ***     **   * *  *****    *  

consensus_2943#0      TCTTAAAAGAGTTTTTTCTTTACAGCGGTATATCTTTCCATATAGTT-ATCATAACC--- 410
consensus_2943#1      ATCGAATTACGACAATCCCTGATGCGGCTGGAGCGTTACATATAGTTGAACTTAACCTCA 381
                          **    *    * * * *    * *  * * ** ********* * * *****   

consensus_2943#0      ATCAAGATTAGCAAATTGTTTTATCTCAAATA------AATTTCCTTCAACAGACAGGAC 464
consensus_2943#1      ATCAAAATCAGATATCAACTATATCTGAGAAATTGGCGGAATGTTCGCGCCTAAAAACAT 441
                      ***** ** **  *     * ***** * * *       * *     *  *  * *  * 

consensus_2943#0      TGAAATTTTAG---AATTTTTCAAAATTTTACTAGGTATTGCATTCAGTTGTAAACAATT 521
consensus_2943#1      TAAGACTTGAAGAAAATTGTTTACAACTGAATGCAATACCTAGTAAAATTTTGAAAAATT 501
                      * * * ** *    **** ** * ** *  *     **     *  * ** * ** ****

consensus_2943#0      TTC----- 524
consensus_2943#1      CTAAAATT 509
                       *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)