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Apis mellifera
cluster # 352 cluster # 352       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_352#0 length = 566 sequences # 3  
 consensus_352#1 length = 430 sequences # 2  
consensusID : consensus_352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 566
fasta sequence 
                              [GCCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGGAACGCGATGAATGGTTCCGGCTGGTGTATCTTCGTGTATAATCTCGCCCCAGAGACCGAGGAGAACGTGCTGTGGCAGTTGTTCGGTCCGTTCGGCGCCGTCCAATCGGTCAAAGTGATCCGCGACCTGCAGACGAACAAGTGCAAAGGCTTCGGTTTCGTGACGATGACCAACTATGACGAGGCGGTGGTCGCCATCCAGAGCTTGAACGGTTACACGCTCGGTAACCGGGTTCTCCAAGTGAGCTTCAAGACGAACAAGAGCAAGGCGGCGTAGGACGACAAGCAACAGCAGCAACAGCATCACCACGATCACCACCACCACTACGACCACCACCACCATCATCGGGCAGCGGGAACAACGGCAGCAGCGGCGGCGGCGGCAGTAGCGGCGGCAGCCACGCCGGCTGTGGCGGCAGCCGCGGCCACGATCGGTCAGGCGACCGCTACAAAGGCCATC]

[+] EMBL BI515528             [GCCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGGAACGCGATGAATGGTTCCGGCTGGTGTATCTTCGTGTATAATCTCGCCCCAGAGACCGAGGAGAACGTGCTGTGGCAGTTGTTCGGTCCGTTCGGCGCCGTCCAATCGGTCAAAGTGATCCGCGACCTGCAGACGAACAAGTGCAAAGGCTTCGGTTTCGTGACGATGACCAACTATGACGAGGCGGTGGTCGCCATCCAGAGCTTGAACGGTTACACGCTCGGTAACCGGGTTCTCCAAGTGAGCTTCAAGACGAACAAGAGCAAGGCGGCGTAGGACGACAAGCAACAGCAGCAACAGCATCACCACGATCACCACCACCACTACGACCACCACCACCATCATCGGGCAGCGGGAACAACGGCAGCAGCGGCGGCGGCGGC                                                                            ]
[+] EMBL BI510520             [                                 ACATTCCACTGTCGCCACTATCCAGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGGAACGCGATGAATGGTTCCGGCTGGTGTATCTTCGTGTATAATCTCGCCCCAGAGACCGAGGAGAACGTGCTGTGGCAGTTGTTCGGTCCGTTCGGCGCCGTCCAATCGGTCAAAGTGATCCGCGACCTGCAGACGAACAAGTGCAAAGGCTTCGGTTTCGTGACGATGACCAACTATGACGAGGCGGTGGTCGCCATCCAGAGCTTGAACGGTTACACGCTCGGTAACCGGGTTCTCCAAGTGAGCTTCAAGACGAACAAGAGCAAGGCGGCGTAGGACGACAAGCAACAGCAGCAACAGCATCACCACGATCACCACCACCACTACGACCACCACCACCATCATCGGGCAGCGGGAACAACGGCAGCAGCGGCGGCGGCGGCAGTAGCGGCGGCAGCCACGCCGGCTGTGGCGGCAGCCGCGGCCACGATCGGTCAGGCGACCGCTACAAAGGCCATC]
[+] EMBL BI514855             [                                 ACATTCCACTGTCGCCACTATCCAGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGGAACGCGATGAATGGTTCCGGCTGGTGTATCTTCGTGTATAATCTCGCCCCAGAGACCGAGGAGAACGTGCTGTGGCAGTTGTTCGGTCCGTTCGGCGCCGTCCAATCGGTCAAAGTGATCCGCGACCTGCAGACGAACAAGTGCAAAGGCTTCGGTTTCGTGACGATGACCAACTATGACGAGGCGGTGGTCGCCATCCAGAGCTTGAACGGTTACACGCTCGGTAACCGGGTTCTCCAAGTGAGCTTCAAGACGAACAAGAGCAAGGCGGCGTAGGACGACAAGCAACAGCAGCAACAGCATCACCACGA                                                                                                                                                    ]




>consensus_352#0
GCCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAGGT
ACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGGAACGCGATGAATG
GTTCCGGCTGGTGTATCTTCGTGTATAATCTCGCCCCAGAGACCGAGGAGAACGTGCTGT
GGCAGTTGTTCGGTCCGTTCGGCGCCGTCCAATCGGTCAAAGTGATCCGCGACCTGCAGA
CGAACAAGTGCAAAGGCTTCGGTTTCGTGACGATGACCAACTATGACGAGGCGGTGGTCG
CCATCCAGAGCTTGAACGGTTACACGCTCGGTAACCGGGTTCTCCAAGTGAGCTTCAAGA
CGAACAAGAGCAAGGCGGCGTAGGACGACAAGCAACAGCAGCAACAGCATCACCACGATC
ACCACCACCACTACGACCACCACCACCATCATCGGGCAGCGGGAACAACGGCAGCAGCGG
CGGCGGCGGCAGTAGCGGCGGCAGCCACGCCGGCTGTGGCGGCAGCCGCGGCCACGATCG
GTCAGGCGACCGCTACAAAGGCCATC

consensusID : consensus_352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence 
                              [TCAAAGGCGCAAACTTGTACGTGAGCGGTTTGCCGAAGAACATGACGCAACAAGATCTGGAGAATCTATTCAGCCCGTACGGCAGAATCATCACGTCGCGGATACTTTGCGACAACATCACCGGATTGTCGAAAGGGGTCGGTTTCATAAGGTTCGACCAGCGGGTCGAGGCCGAGAGGGCGATCCAAGAATTAAACGGTACCATTCCGAAGGGCTCGTCCGAGCCGATCACCGTCAAGTTCGCCAACAATCCGAGCAACAACAACAAGGCGATACCGCCGTTGGCCTATCTGACACCGCAGGCGACCCGACGATATGGCGNNCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAG-AGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGG]

[+] EMBL BI511619             [TCAAAGGCGCAAACTTGTACGTGAGCGGTTTGCCGAAGAACATGACGCAACAAGATCTGGAGAATCTATTCAGCCCGTACGGCAGAATCATCACGTCGCGGATACTTTGCGACAACATCACCGGATTGTCGAAAGGGGTCGGTTTCATAAGGTTCGACCAGCGGGTCGAGGCCGAGAGGGCGATCCAAGAATTAAACGGTACCATTCCGAAGGGCTCGTCCGAGCCGATCACCGTCAAGTTCGCCAACAATCCGAGCAACAACAACAAGGCGATACCGCCGTTGGCCTATCTGACACCGCAGGCGACCCGACGATATGGCGGCCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAGTAGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGG]
[+] EMBL BI513704             [TCAAAGGCGCAAACTTGTACGTGAGCGGTTTGCCGAAGAACATGACGCAACAAGATCTGGAGAATCTATTCAGCCCGTACGGCAGAATCATCACGTCGCGGATACTTTGCGACAACATCACCGGATTGTCGAAAGGGGTCGGTTTCATAAGGTTCGACCAGCGGGTCGAGGCCGAGAGGGCGATCCAAGAATTAAACGGTACCATTCCGAAGGGCTCGTCCGAGCCGATCACCGTCAAGTTCGCCAACAATCCGAGCAACAACAACAAGGCGATACCGCCGTTGGCCTATCTGACACCGCAGGCGACCCGACGATATGGCGNNCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCC   AGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACC    ]




>consensus_352#1
TCAAAGGCGCAAACTTGTACGTGAGCGGTTTGCCGAAGAACATGACGCAACAAGATCTGG
AGAATCTATTCAGCCCGTACGGCAGAATCATCACGTCGCGGATACTTTGCGACAACATCA
CCGGATTGTCGAAAGGGGTCGGTTTCATAAGGTTCGACCAGCGGGTCGAGGCCGAGAGGG
CGATCCAAGAATTAAACGGTACCATTCCGAAGGGCTCGTCCGAGCCGATCACCGTCAAGT
TCGCCAACAATCCGAGCAACAACAACAAGGCGATACCGCCGTTGGCCTATCTGACACCGC
AGGCGACCCGACGATATGGCGNNCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTC
CACTGTCGCCACTATCCAGAGGTACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGAT
GCTACCCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_352#0      GCCCAATCCACCATCCGACCGGCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAGGT 60
consensus_352#1      ------------------------------------------------------------
                                                                                 

consensus_352#0      ACAGCCCGCTGGCAGGCGATCTATTGGCAAACTCGATGCTACCCGGGAACGCGATGAATG 120
consensus_352#1      ------------------------------------------------------TCAAAG 6
                                                                           * ** *

consensus_352#0      GTTCCGGCTGGTGTATCTTCGTGTATAATCTCGCCCCAGAGACCGAGGAGA-ACGTGCTG 179
consensus_352#1      GCGCAAACTTGTA------CGTGAGCGGTTT-GCCGAAGAACATGACGCAACAAGATCTG 59
                     *  *   ** **       ****     * * ***  ***    ** *  * * *  ***

consensus_352#0      TGGCAGTTGTTCGGTCCGTTCGGCGCCGTCCAATCGGTCAAAGTGATCCGCGACCTGCAG 239
consensus_352#1      GAGAATCTATTCAGCCCGTACGGCAGAATCATCACGTCGCGGATACTTTGCGACAACATC 119
                       * *  * *** * **** ****    **    **       *  *  *****      

consensus_352#0      ACGAACAAGTGCAAAGGCTTCGGTTTCGTGACGATGACCAACTATGACGAGGCGGTGGTC 299
consensus_352#1      ACCGGATTGTCGAAAGGGGTCGGTTTCATAAGGTTCGACCAGCGGGTCGAGGCCGAGAGG 179
                     **      **  *****  ******** * * * *   * *    * ****** * *   

consensus_352#0      GCCATCCAGAGCTTGAACGGTTACACGCTCGGTAACCGGGTTCTCCAAGTGAGCTTCAAG 359
consensus_352#1      GCGATCCAAGAATTAAACGGTACCATTCCGAA-----GGGCTCG----------TCCGAG 224
                     ** *****    ** ******  **  *         *** **           * * **

consensus_352#0      ACGAACAAGAGCAAGGCGGCGTAGGACGACAAGCAACAGCAGCAACAGCATCACCACGAT 419
consensus_352#1      CCGATCACCGTCAAGTTCGC-CAACAATCCGAGCAACAACAACAA-GGCGATACCGCCGT 282
                      *** **    ****   **  *  *   * ******* ** ***  **   *** *  *

consensus_352#0      CACCACCACCACTACGACCACCACCACCATCATCGGGCAGCGGGAACAACGGCAGCAGCG 479
consensus_352#1      TGGCCTATCTGACACCGCAGGCGACCCGACGATATGGCGNNCCAATCCACCATCCGACCG 342
                        *    *    **  *   *  * * *  **  ***      * * **      * **

consensus_352#0      GCGGCGGCGGCAGTAG-CGGCGGCAGCCACG--CCGGCTGTGGCGGCAGCCG-CGGCCA- 534
consensus_352#1      GCCGCTTCAGGTACATTCCACTGTCGCCACTATCCAGAGGTACAGCCCGCTGGCAGGCGA 402
                     ** **  * *    *  *  * *  *****   ** *  **   * * ** * * * *  

consensus_352#0      -CGATCGGTCAGGCGACCGCTACAAAGGCCATC 566
consensus_352#1      TCTATTGGCAAACTCGATGCTACCCGGG----- 430
                      * ** **  *       *****   **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)