Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 358 cluster # 358       Sequences # 5       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_358#0 length = 729 sequences # 4  
 consensus_358#1 length = 415 sequences # 1  
consensusID : consensus_358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 729
fasta sequence 
                              [GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGGCTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAGACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACAATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTACGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATTATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAATCTATAATT]

[+] EMBL BI516234             [GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGAAATTGGAAAAAG    ACCGACCCAAGGTTATCGAGATCCGAATTCGGCTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAGACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACAATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGAT                                                                                                                                                                                                                          ]
[+] EMBL BI511518             [            ATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGGCTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAGACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACAATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGA                                                                                                                                                                                                                           ]
[-] EMBL BI516588             [                                                                                                                                                                                                                                                                            GCGACGTGACGCGACAAGACGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTACGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATTATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAATCTATAATT]
[+] EMBL BI511591             [                                                                                                                                                                                                                                                                                               CGTGACGTGACGTGACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAACAATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGATGTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTACGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATTATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAATCTATAATT]




>consensus_358#0
GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACA
AATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGG
CTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAG
ACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACA
ATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGT
GACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAAC
AATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGAT
GTAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCACA
TACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTAC
GTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTATT
ATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCTA
TCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAAA
TCTATAATT

consensusID : consensus_358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence 
                              [TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTGTTTCGTTGGGACACCAGGAAAGGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGAAATCGAAGCGCGAATAAATAATAGTCAGTGTCGGAGAAATTTTGCGCGAGAGTGAGTACGAAAGAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGGGTGAGATATTAAGAGAGGGATAAGAAGAGGGGTAATGGACAGTAAGAGAGCGTGAGGCCCAGCAGGGGTGCTCAACTCGGGTGAAGTGCGCCATGGGTCCCAATTGCGTGGTAATATAATTNNNATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGA]

[+] EMBL BI513776             [TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTGTTTCGTTGGGACACCAGGAAAGGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGAAATCGAAGCGCGAATAAATAATAGTCAGTGTCGGAGAAATTTTGCGCGAGAGTGAGTACGAAAGAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGGGTGAGATATTAAGAGAGGGATAAGAAGAGGGGTAATGGACAGTAAGAGAGCGTGAGGCCCAGCAGGGGTGCTCAACTCGGGTGAAGTGCGCCATGGGTCCCAATTGCGTGGTAATATAATTNNNATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGA]




>consensus_358#1
TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTGTTTCGTTGGGACACCAGGAAA
GGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGAAAT
CGAAGCGCGAATAAATAATAGTCAGTGTCGGAGAAATTTTGCGCGAGAGTGAGTACGAAA
GAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGGGTGAGATATTAAGAGAGGGA
TAAGAAGAGGGGTAATGGACAGTAAGAGAGCGTGAGGCCCAGCAGGGGTGCTCAACTCGG
GTGAAGTGCGCCATGGGTCCCAATTGCGTGGTAATATAATTNNNATTTTCAATTTATTGT
ATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACAAATTGAAGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_358#0      GATTTTCAATTTATTGTATTGATTGAGAAAAATTCGTGATGATTTTAATTACGCGTTACA 60
consensus_358#1      --TTTTTTTTTTCCTTTTTTTTTCTTGCGAATTAAATTGTG-TTTCGTTGGGACACCAGG 57
                       ****   ***  * * **  *   *  ** *   *  ** ***   *    *   *  

consensus_358#0      AATTGAAGAGGAAATTGGAAAAAGACACACCGACCCAAGGTTATCGAGATCCGAATTCGG 120
consensus_358#1      AAAGGAGAATGCACGAGAGAAGTAGAAGAGAGGATATAGTTTATAGAAAAGAAGGGAAGA 117
                     **  **  * * *   *  **     * *  *     ** **** ** *         * 

consensus_358#0      CTGCCCTGTTGGCCAGTGCACAAGAAAATAAAACATTCGTAACACATATACGTAACATAG 180
consensus_358#1      ----------AATCGAAGCGCGAATAAATAATA-GTCAGTGTCGGAGAAATTTTGC---- 162
                                  *   ** * *  ****** *  *  **  *  * * *  *  *    

consensus_358#0      ACACGAGACAGAGACAGACAGGTTAAACACTTAACATAAACAAAGTTATACACGCATACA 240
consensus_358#1      --GCGAGAGTGAGTACGAAAGAAAGATAGCGTGGGAGAAAGAGAGCGAGAGAGGGAGAGG 220
                        *****  ***   ** **    *   * *   * *** * **  * * * * * *  

consensus_358#0      ATGATACACGAACACTACTACACAGGACGCGACGTGACGCGACAAGACGTGACGTGACGT 300
consensus_358#1      GTGAGATATTAAGA-------GAGGGATAAGAAGAGGGGTAATGGACAGTAAGAGAGCGT 273
                      *** * *  ** *          ***   ** * *  *  *      ** *     ***

consensus_358#0      GACGTGACACGACACGACGTAACATAACATGACGTAAGACATTGTAAACATTTTCGAAAC 360
consensus_358#1      GAGGCCCAGCAGGGGTGCTCAAC-TCGGGTGAAGTGCGCCATGGGTCCCAATTGCGTGGT 332
                     ** *     *       *  *** *    *** **  * *** *    ** ** **    

consensus_358#0      AATTGCGAGCGAAACGATCTGTTCGAGAAATTATGTGTACAAAAAATTCGCTTTGTCGAT 420
consensus_358#1      AAT-ATAATTNNNATTTTCAATTTATTGTATTGATTGA--GAAAAATTCGTGATGATTTT 389
                     ***    *     *   **  **      ***   **    *********   **    *

consensus_358#0      G-TAATACACTCTCATTGGGAGAACAAATGTAAAACATAGGTGAGAGATGCGGAGTGCAC 479
consensus_358#1      AATTACGCGTTACAAATTGAAGAGGA---------------------------------- 415
                       * *  *  *   * * * ***  *                                  

consensus_358#0      ATACACATGTGACGAATACACTTTGACGAGATACATGAAACAGACACGAGGAACACGTTA 539
consensus_358#1      ------------------------------------------------------------
                                                                                 

consensus_358#0      CGTACACTCTCGAATCTGTAGACTGTAGGTTTACTATTAATTATTATGAATTATAATTAT 599
consensus_358#1      ------------------------------------------------------------
                                                                                 

consensus_358#0      TATATCTATTATATATTATATCAATGTATAATTATATTTAGTTTTTAGGTTACTATGTCT 659
consensus_358#1      ------------------------------------------------------------
                                                                                 

consensus_358#0      ATCATTTCCCGCTTGTACATATGCCGTGAGCTCGAAAAAATTAAATCTTTATCAAAAGAA 719
consensus_358#1      ------------------------------------------------------------
                                                                                 

consensus_358#0      ATCTATAATT 729
consensus_358#1      ----------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)