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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence
[ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTGATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT]
[+] EMBL BI503851 [ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTGATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTT ]
[+] EMBL BI509822 [ AGAAAAGAAGCTTTACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTGATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTTGCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTACGAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAGATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTAGGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTT ]
[-] EMBL BI508120 [ GATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATTCGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGCACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTAATAACCAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGTCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTT]
consensusID : consensus_494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTAGTCTCTAGAT]
[-] EMBL BI510198 [AACGATTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGGTTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGCGGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCATCGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCATCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGAAAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACGTTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACATATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGTCGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAATGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTAGTCTCTAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_494#0 ACTAAATATTTTTCTATTATAATTTAATATAATTTCTTAATTGCAGTAATAATCCGGCTG 60
consensus_494#1 ------------------------------------------------------------
consensus_494#0 ATCGTCGAGGTATTCGTATCAAATGCAACGGGAAGAAACGCAGCGGTAGAAAAGAAGCTT 120
consensus_494#1 ------------------------------------------------------------
consensus_494#0 TACTCTTCTGATCTAAATAAAATTGTTCGAATCTCGCTTAATTGGACTTTACACTTCTTG 180
consensus_494#1 ------------------------------------------------------------
consensus_494#0 ATTTCCCTTATCGTGTCACGTTTGCACGTTGGAGAAGCTGGTACGACGACTGGGACATTT 240
consensus_494#1 ------------------------------------------------------------
consensus_494#0 GCCGATTCTTATCAATGGCCGTCCAGTCCATAAATTCACGAGCCGGTGACCAATATTTAC 300
consensus_494#1 ------------------------------------------------------------
consensus_494#0 GAGGTCCTCTTCAAGCGTTACAAGCTGTAAACGAGTCCTCTTATTAATCCTATGCACAAG 360
consensus_494#1 ------------------------------------------------------------
consensus_494#0 ATTTTTCGAATCGTCGACCAGCGAGTAAGCAGTTGAATCGTTTGCGATGCAACGCGATTA 420
consensus_494#1 ------------------------------------------------------------
consensus_494#0 GGTGACAATTCATGCGATATGCGTTGAACGGGGCGTCGTGTTTCGTATGCGATTGCGATT 480
consensus_494#1 ------------------------------------------------------------
consensus_494#0 CGAGTTGAAATTACACGCGAAGTAATAGGGGAGGGGAAAAAGATAAGGGATCAGTTTTGC 540
consensus_494#1 ------------------------------------------------------------
consensus_494#0 ACTGTTTAAAATGTTCTCGTTATTCGTAAGGGAGGGAGGAGGGGAAGGGAACGAGAACGA 600
consensus_494#1 -------------------------------------------------------AACGA 5
*****
consensus_494#0 TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG 660
consensus_494#1 TTGCGATGAGTTCATAATTGGCTTTACGCAAACTATCGTGACTCGATGGTTTAATAACGG 65
************************************************************
consensus_494#0 TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC 720
consensus_494#1 TTTTTCGAGATAGCAGAGCCGATCGGTTTAATTTGCAACGATAGCATATCAGTGGGTTGC 125
************************************************************
consensus_494#0 GGTTAATAACCA-GTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCGT 779
consensus_494#1 GGTTANTNNNNNAGTCCAAGGTACGTGAACAAATAGGTGTGTTCAATCAGCATCCCGCAT 185
***** * ********************************************* *
consensus_494#0 CGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCA 839
consensus_494#1 CGTTCCAAATTACTCCGCAATATTTTTGTTAAAATATCCATCCGCCGTCGGTTTCATCCA 245
************************************************************
consensus_494#0 TCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGA 899
consensus_494#1 TCGATGTACAATATCGTATAAATGTAACGCGTACGACTGATTATTCAAAACGTACGGAGA 305
************************************************************
consensus_494#0 AAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACG 959
consensus_494#1 AAGCACGGGGAATTGAATAATTTTATCGCTTTATTTATGCGAGAAAGTTTTGTAAATACG 365
************************************************************
consensus_494#0 TTTTGGAACCTATAA----AATTATTTGCATTTAAAATTTTATTCGTCGTTTT------- 1008
consensus_494#1 TTTTGGAACCTTTAATAAAGAAAAAGTGAATGAAAAATTTTGTCTTTTAATTATTTACAT 425
*********** *** * * ** ** ******** * * **
consensus_494#0 ------------------------------------------------------------
consensus_494#1 ATATATATATATATATGTATACATACCTATAAAATTATTTGCATTTAAAATTTTATTCGT 485
consensus_494#0 ------------------------------------------------------------
consensus_494#1 CGTTTTTAAATTCCTTGTACGCTCGAATCAGTTTAATTGGATAATCGTTTCCTCATCGAA 545
consensus_494#0 ------------------------------------------------------------
consensus_494#1 TGATAAAAGGTGTGCCAAAATTAATGCAAGATTTGAATTAAATATAAAAGAGAGTTTTTA 605
consensus_494#0 ----------
consensus_494#1 GTCTCTAGAT 615
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |