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Apis mellifera
cluster # 566 cluster # 566       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_566#0 length = 638 sequences # 3  
 consensus_566#1 length = 569 sequences # 1  
consensusID : consensus_566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 638
fasta sequence 
                              [TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAA-TCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATTTTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC]

[+] EMBL BI510411             [TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAA TCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGA                                                                                                                                                                                                                                                                               ]
[+] EMBL BI505809             [                                GTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAA TCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTTATTTTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC]
[+] EMBL BI507053             [                                                                                                             GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAANTCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTCTCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATTTTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAA        ]




>consensus_566#0
TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACA
TAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAGGATGATATTAA
GCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGGGTTACAATCGG
AGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGATCAGAAGAAGAA
AGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGATTAGATTCTTC
AAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACTGTTAGTGATTC
TCAAGGATTAACAGACTTTTCTGCACATCTGGGATTTTCAGAAGATTCCAATTCACAAAA
TAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTTGTAACTGTTATTT
GAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTGCACATTATAAAGT
TATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATTTTTCATTTTATTC
TATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC

consensusID : consensus_566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence 
                              [CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTTCTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTTTCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAATCTCTTAACATATTATAGATGCACGAGGAAATGTTGAAACGTTTCACAAAAAAAGCAAAGAATGTAGTAAATATGGATATCAAAAATGGATTAAAATTTTTCTTACTTGCGAGATTTAATAGAGATTTTGCATTACACATGTCAGCTGTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTTGATTGAGTAATATAGTGTTGTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAAATGGGTTACAATCGGAGAAACTACTATGA]

[+] EMBL BI506375             [CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTTCTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTTTCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAATATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAGGATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAATCTCTTAACATATTATAGATGCACGAGGAAATGTTGAAACGTTTCACAAAAAAAGCAAAGAATGTAGTAAATATGGATATCAAAAATGGATTAAAATTTTTCTTACTTGCGAGATTTAATAGAGATTTTGCATTACACATGTCAGCTGTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTTGATTGAGTAATATAGTGTTGTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAAATGGGTTACAATCGGAGAAACTACTATGA]




>consensus_566#1
CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTT
CTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTT
TCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAAT
ATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAG
GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAATCTCTTAA
CATATTATAGATGCACGAGGAAATGTTGAAACGTTTCACAAAAAAAGCAAAGAATGTAGT
AAATATGGATATCAAAAATGGATTAAAATTTTTCTTACTTGCGAGATTTAATAGAGATTT
TGCATTACACATGTCAGCTGTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTT
GATTGAGTAATATAGTGTTGTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAA
ATGGGTTACAATCGGAGAAACTACTATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_566#0      ------------------------------------------------------------
consensus_566#1      CCCCTACCAGGCGTCGCGAACATATCGTCTTATTATGATTGTAATTCTTGTATTCTTGTT 60
                                                                                 

consensus_566#0      ------------------------------------------------------------
consensus_566#1      CTTAGTTTGAATTGAGTGTGTTTGCTATCTTATTGTAGAAATTTGCAACGACTGTCAGTT 120
                                                                                 

consensus_566#0      -----------TTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAAT 49
consensus_566#1      TCCTAACCTCTTTGCCGACGAATGTTCCGGTGTTTCATATTGTGTTCAGTTAATAGTAAT 180
                                *************************************************

consensus_566#0      ATATAATCACATAACATGATGTCGCGGTCTGTGCGTGCAGAGACTCGTAGTCGTGCCAAG 109
consensus_566#1      ATATAATCACATAACATGATGTCGCGGTCTGTGCNNNCNGAGACTCGTAGTCGTGCCAAG 240
                     **********************************   * *********************

consensus_566#0      GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGGAAAAGAAATGG 169
consensus_566#1      GATGATATTAAGCGTGTAATGCAAGTCGTTGACAAAGTTCGCCATTGGTAAA-------- 292
                     ************************************************ ***        

consensus_566#0      GTTACAATCGGAGAAACTACTATGAAGATTTATAAATGGGTACCTATATCGACACTTGAT 229
consensus_566#1      -------TCTCTTAACATATTAT--AGATGCACGAGGAA------ATGTTGAAAC---GT 334
                            **    **  ** ***  ****  *  *          ** * ** **    *

consensus_566#0      CAGAAGAAGAAAGGAAAAACAGTTGCAGACAAAGAAAATGGTTTGCCAAGAAAAAGTGGA 289
consensus_566#1      TTCACAAAAAAAGCAAAGAATGTAGTAAATATGGATATC------------AAAAATGGA 382
                        *  ** **** *** *  ** * * * *  ** *              **** ****

consensus_566#0      TTAGATTCTTCAAATTCCAACTTTGGTCTTACAGAGGATTCAAATACATGTTTTTCAACT 349
consensus_566#1      TTAAAATTTTTC--TTACTTGCGAGATTTAATAGAGATTTTGCAT-TACACATGTCAGCT 439
                     *** * * **    ** *      * * * * ****  **   **  *    * *** **

consensus_566#0      GTTAGTGATTCTCAAGGATTAACAGACTTTTC-TGCACATCTGG-GATTTTCAGAAGATT 407
consensus_566#1      GTAAACAGACTTTTGTAGTTATGAAATATTTCATGTGTGTTGATTGAGTAATATAGTGTT 499
                     ** *       *      ***  * *  **** **    *     ** *   * *   **

consensus_566#0      CCAATTCACAAAATAGTGAACCAACACCTAAAAGGTTAAAGACTGATTAAAGTTTATCTT 467
consensus_566#1      GTATGTCTGCTTTTTTAATAACAGTAAAGAAGGGAAAAGAAATGGGTTACAATCGGAGAA 559
                       *  **      *     * **  *   **  *   * * *  * *** * *       

consensus_566#0      GTAACTGTTATTTGAGATATAAGATATTTAGGAAATCATTTTTATCTTCTACAAAATTTG 527
consensus_566#1      ACTACTATGA-------------------------------------------------- 569
                        *** * *                                                  

consensus_566#0      CACATTATAAAGTTATCTTAAATCATGATTGTAAATTGACAAATTCAAAGAAATTTCATT 587
consensus_566#1      ------------------------------------------------------------
                                                                                 

consensus_566#0      TTTCATTTTATTCTATTTAATGAATATTTTTTCATTGAAGAAAAGATAATC 638
consensus_566#1      ---------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)