|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[TACATCCAAATGAATAGATCGCAAATGTCTGTTAATTGTTGATACAAACAAATACTTGAATTCGTCTTTGATGTTGTATCTCACCATTCTTTACTGATTATTGTCCCATCTGATATAGGTCGAAACCTACGACATCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTG]
[-] EMBL BI517100 [TACATCCAAATGAATAGATCGCAAATGTCTGTTAATTGTTGATACAAACAAATACTTGAATTCGTCTTTGATGTTGTATCTCACCATTCTTTACTGATTATTGTCCCATCTGATATAGGTCGAAACCTACGACATCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTG]
consensusID : consensus_578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 482 fasta sequence
[TGATTGATTGAACTATTCTATGTATTCTATGTAAAAGAAAAAAGTTTATATACCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTGCCTTTGACAGCTAAAATTTGGCAATATTAGTATCGCTAA]
[-] EMBL BI504116 [TGATTGATTGAACTATTCTATGTATTCTATGTAAAAGAAAAAAGTTTATATACCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGTGGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCAGGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTGCCTTTGACAGCTAAAATTTGGCAATATTAGTATCGCTAA]
[+] EMBL BI517164 [ CAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTA ]
[+] EMBL BI502975 [ CAGAATCATTATCGCTACTTTCGTCAGTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAATAACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGACTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCAGTTAAATTTTCATCTTCTGTCGAATTAGCCGTTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_578#0 TACATCCAAATGAATAGATCGCAAATGTCTGTTAATTGTTGATACAAACAAATACTTGAA 60
consensus_578#1 ------------------------------------------------------------
consensus_578#0 TTCGTCTTTGATGTTGTATCTCACCATTCTTTACTGATTATTGTCCCATCTGATATAGGT 120
consensus_578#1 -----------TGATTGATTGAACTATTCTATG--------TATTCTATGTAAAAGAAA- 40
** * ** ** ***** * * * * ** * * * *
consensus_578#0 CGAAACCTACGACATCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGT 180
consensus_578#1 -AAAGTTTAT-ATACCTAGCATTATTTTCTGCAACATGTGGTGGCAAAGATGTAGGTGGT 98
** ** * * *********************************************
consensus_578#0 GGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCA 240
consensus_578#1 GGTGGAGGTTGAGCATTTGGTGGACCACTATTATCAGAATCATTATCGCTACTTTCGTCA 158
************************************************************
consensus_578#0 GTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAAT 300
consensus_578#1 GTTCGTTTAGCCGTTTCTGCCAAAAGATGCGAAGGTACTCCTCTAGGAGAAAATTTAAAT 218
************************************************************
consensus_578#0 AACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGA 360
consensus_578#1 AACACTTCAGAATGAGATCTGATCCTGCGTTGCGGTCTTTGAAATCGCAAGTTTAGTTGA 278
************************************************************
consensus_578#0 CTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCA 420
consensus_578#1 CTGGCATCGGTCACATATTTTTCGCTTTGTCTTCGACGACGTAACGCAGGAGTACATCCA 338
************************************************************
consensus_578#0 GTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCA 480
consensus_578#1 GTTAAATTTTCATCTTCTGTCGAATTAGCCGTTAAAGATGAAAAGATCGATGATTCATCA 398
************************************************************
consensus_578#0 GGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTG--------------- 525
consensus_578#1 GGTAATGCCAAGCAGCGTCGCAATACCTCCACTGTCAAGCGTTTGCCTTTGACAGCTAAA 458
*********************************************
consensus_578#0 ------------------------
consensus_578#1 ATTTGGCAATATTAGTATCGCTAA 482
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |