cluster # 593

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Apis mellifera
cluster # 593 cluster # 593 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_593#0 length = 786 sequences # 2

consensus_593#1 length = 488 sequences # 1
consensus_593#2 length = 453 sequences # 1

consensusID : consensus_593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 786
fasta sequence

                              [GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGGCGAGCGACGGCTTCGAAGGGACTGGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTGCCNTGGTTCATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG]

[+] EMBL BI509215             [GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGA                                                                                                                                                                                                                                 ]
[+] EMBL BI502760             [                                                                                                                                                                                                                                                      GCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGATGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGGCGAGCGACGGCTTCGAAGGGACTGGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTGCCNTGGTTCATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG]




>consensus_593#0
GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATAC
TGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAAT
GAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAG
GGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGC
GTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCG
CGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACC
CAACGCAACGTATATGTGTGCATATATATATATATATATGACGCGGTGCATCGAGACGGT
TTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGA
CGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTG
GAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTC
AGCGAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGGCGA
GCGACGGCTTCGAAGGGACTGGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTG
CCNTGGTTCATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACG
CGTTCG

consensusID : consensus_593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 488
fasta sequence

                              [TTTTCGTTCGCGCGAATTTCCACGCGTCGATCGAACTTCGCTTGAAGAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG]

[+] EMBL BI507392             [TTTTCGTTCGCGCGAATTTCCACGCGTCGATCGAACTTCGCTTGAAGAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG]




>consensus_593#1
TTTTCGTTCGCGCGAATTTCCACGCGTCGATCGAACTTCGCTTGAAGAAATTCACACAAG
CGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATACTGAATATGTGAAAG
AGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAATGAGATATAAAAAGG
GGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGA
GGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAG
CGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCGCGATTCACGCGTCT
CGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATA
TGTGTGCATATATATATACTAGGTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATA
CGCGTTCG

consensusID : consensus_593#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [TATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGGTTTCGAAGGGACTGGAAAAATCGTTTGTCGCGA]

[+] EMBL BI509562             [TATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATATATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGATTCGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGGTTTCGAAGGGACTGGAAAAATCGTTTGTCGCGA]




>consensus_593#2
TATAGCGCGAGACAGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGATA
AATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATATATATAT
ATGACGCGGTGCATCGAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCG
TTTACGCTCGACGATTCGCTCGACGATTCGCTCGACGATCCGTCGAGAAGTGTCTCGCGA
CGCGACGAGAAAAAGAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAG
CGACGCGGATGGACGAAGAGGGGGAATCGAGGGTCAGCGAGCGAGCGAGCGAGCGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGG
TTTCGAAGGGACTGGAAAAATCGTTTGTCGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_593#0      GAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGAATAAGAAAAGATTCACATAC 60
consensus_593#2      ------------------------------------------------------------
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      TGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTCTGCGAACGAAAAGACGCGAAT 120
consensus_593#2      ------------------------------------------------------------
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      GAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAAACGGGAGACAAGAGGACAAAG 180
consensus_593#2      ------------------------------------------------------------
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      GGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTCGACGCTCGGCACCGTTCTCGC 240
consensus_593#2      ------------------------------------------------------------
consensus_593#1      ------------------------------------------------------------
                                                                                 

consensus_593#0      GTGGAAGCGAGAAGCGATGAAACGCGGCGCGGCTAGGATTATAGCGCGAGACAGCGCCCG 300
consensus_593#2      ---------------------------------------TATAGCGCGAGACAGCGCCCG 21
consensus_593#1      ----------------------------------TTTTCGTTCGCGCGAATTTCCACGCG 26
                                                              * ******     * * **

consensus_593#0      -CGATTCA--CGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATAT 357
consensus_593#2      -CGATTCA--CGCGTCTCGGCAGCGTCGCTATCTCACGGATAAATTTATTAAACGCATAT 78
consensus_593#1      TCGATCGAACTTCGCTTGAAGAAATTCACACAAGCGCGCCGTAGAGAGTCCAACGAGAGA 86
                      ****  *    **  *    *   ** *     * **    *     *  ****     

consensus_593#0      ACCCAACGCAACGTATATGTGTGCATATATATATATATATAT--GACGCGGTGCA---TC 412
consensus_593#2      ACCCAACGCAACGTATATGTGTGCATATATATATATATATATATGACGCGGTGCA---TC 135
consensus_593#1      ATAAGAAAAGATTCACATAC-TGAATATGTGAAAGAGCAAGGAAGAAGGGGGGGAAATTC 145
                     *    *    *   * **   ** **** *  *     *     ** * ** * *   **

consensus_593#0      GAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGAT 472
consensus_593#2      GAGACGGTTTTTCCCATCGCTTCGAGGCAATAATAATGGGGCGCGTTTACGCTCGACGAT 195
consensus_593#1      TGCGAACGAAAAGACGCGAATGAGATATAAAAAGGGGGGGGAGAGATAAGAAAAGAAAAA 205
                                   *     *  **   ** **    **** * * * *     **  * 

consensus_593#0      TCGCTCGACGAT-------------CCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAA 519
consensus_593#2      TCGCTCGACGATTCGCTCGACG-ATCCGTCGAGAAGTGTCTCGCGACGCGACGAGAAAAA 254
consensus_593#1      ACGGGAGACAAGAGGACAAAGGGAAGAGGGGAAGAGGATTTTTAGTTAGGGTAATTTTTC 265
                      **   *** *                *  **  **  * *   *    *   *      

consensus_593#0      GAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGAC 579
consensus_593#2      GAAACGCGTAAGAATTCGTTGGAAGAATCGTGGGTTGGAAGAACAGCGACGCGGATGGAC 314
consensus_593#1      GACGCTCGGCACCGTTCTCGCGTGGAAGCGAGAAGCGATGAAAC-GCGGCGCGGCTAGGA 324
                     **  * **  *   ***    *  *** ** *    *    *** *** ***** * *  

consensus_593#0      GAAGAGGGGGAATCGAGGGTCAGCGAGCGA-GCGAGCGAGCGAGCGAGAGAGAGAGAGAG 638
consensus_593#2      GAAGAGGGGGAATCGAGGGTCAGCGAGCGA-GCGAGCGAGCGAGAGAGAGAGAGAGAGAG 373
consensus_593#1      TTATAGCGCGAGAC-AGCGCCCGCGATTCACGCGTCTCGGCAGCGTCGCTATCTCACGGA 383
                       * ** * **  * ** * * ****   * ***     **      *  *      *  

consensus_593#0      AGAGA------------------AGTCGAGCGGTCGGCGAGCGACGGCTTCGAAGGGACT 680
consensus_593#2      AGAGAGAGAGAGAGAGAGAGAGAAGTCGAGCGGTCGCCGAGCGACGGTTTCGAAGGGACT 433
consensus_593#1      TAAATTTATTAAACGCATATACCCAACGCAACGTATATGTGTGCATATATATATACTAGG 443
                       *                       **    **    * * *      *  *    *  

consensus_593#0      GGAAAAATCGTTTGTCGCGATTAGTAGCGATTCGAGGTTGCCNTGGTTCATATATACTAG 740
consensus_593#2      GGAAAAATCGTTTGTCGCGA---------------------------------------- 453
consensus_593#1      TGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG--------------- 488
                      ***** * *  *  **  *                                        

consensus_593#0      GTGAAAATTTGCATCCCGTAAACGAGCACGAAACGATACGCGTTCG 786
consensus_593#2      ----------------------------------------------
consensus_593#1      ----------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)