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Apis mellifera
cluster # 599 cluster # 599       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_599#0 length = 952 sequences # 3  
 consensus_599#1 length = 201 sequences # 1  
consensusID : consensus_599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 952
fasta sequence 
                              [CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAAAGTTCTACTCACAAAGTCATTAGAAATTGTTTCTAGTTTGTAATAACGAGTAATAGCATTACGACGAGTATGAATTTATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACTACGTTAACGCACCAACATTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATCAGGCTCCTAAGAGTCGCGAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAAAATAATATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTAAATATCTATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGCGATAGATTTAAGCGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG]

[+] EMBL BI509831             [CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAAAGTTCTACTCACAAAGTCATTAGAAATTGTTTCTAGTTTGTAATAACGAGTAATAGCATTACGACGAGTATGAATTTATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACTACGTTAACGCACCAACATTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATCAGGCTCCTAAGAGTCGCGAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAAAATAATATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTA                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL BI504595             [                                                                                                                                                                                                                                                                                                                                                             ATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTAAATATCTATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGCGATAGATTTAAGCGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG]
[-] EMBL BI515525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG]




>consensus_599#0
CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCA
TTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAAAGTTCTACTCACAAAG
TCATTAGAAATTGTTTCTAGTTTGTAATAACGAGTAATAGCATTACGACGAGTATGAATT
TATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACTACGTTAACGCACCAACA
TTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATCAGGCTCCTAAGAGTCGC
GAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAAAATAATATCTATTGTAT
TTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAATTTCTTAATGAAGAAAA
TCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGATTTATCCTGTATATAGT
ATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAAAATCTCGCGTCTCTCGG
CGACACTGCTACATAGTGTATATATATATACTGAACAACATTGCTACGTATTAAATATCT
ATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGCGATAGATTTAAGCGATA
TCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTTTTCAAGTTAAATCATAT
TCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCTTGTTAAAGCATGAATAA
AAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTATTAAATGTTCCTTAAATA
TTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGATGCGTGTATATCGTTTC
AAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAATATTGTACG

consensusID : consensus_599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence 
                              [GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAACGATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGATTTAAGAAAAAACAAAAAAAAA]

[+] EMBL BI508198             [GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCGCGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAACGATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGATTTAAGAAAAAACAAAAAAAAA]




>consensus_599#1
GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCG
CGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAAC
GATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGAT
TTAAGAAAAAACAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_599#0      ----------------CAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCG 44
consensus_599#1      GATGCAAAAAAATAATCAAAGATGCCGAATTAATGGGTTAATTAAAGTAAAACGCGCGCG 60
                                     ********************************************

consensus_599#0      CGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAATTAAAA 104
consensus_599#1      CGCGAAATTGAGTTCATTTTGTTTGTCTCGTGTTTAGACTGCTCAAGAGCCTAAAAAAAC 120
                     ******************************************************  *** 

consensus_599#0      AGTTCTACTCACAAAGTCATTAGAAATTGTTTCTAGTTTG-TAATAACGAGTAATAGCAT 163
consensus_599#1      GATCACAATTCCGACGGCGCGGCCAAGATTCGACGGTCTCCTTGTGCTTAAAGAGAAGAT 180
                       *   * *  * * * *      **   *     ** *  *  *    *   * *  **

consensus_599#0      TACGACGAGTATGAATTTATCTCTAAGCTCGTAATCGCGTTAATAGAGGCGCACTGTACT 223
consensus_599#1      TTAAGAAAAAACAAAAAAAAA--------------------------------------- 201
                     *      *  *  **   *                                         

consensus_599#0      ACGTTAACGCACCAACATTATTCAGCTTGTAAGATAGATCGTATTCCTTCCATTTGAATC 283
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      AGGCTCCTAAGAGTCGCGAGATGTGTAATACATTACGATATATATTTCCTTCGGTAAAAA 343
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      AATAATATCTATTGTATTTATTCACAAAAGAAGAAAACGCAATGTTCCTCGATTGAACAA 403
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TTTCTTAATGAAGAAAATCAAAAATTAATTCTTCTTTTTTAATCGAATAACCTGCATTGA 463
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TTTATCCTGTATATAGTATATAATAATGAATCGGCAATAAGGAAAGAAATAAAGAAAGAA 523
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      AATCTCGCGTCTCTCGGCGACACTGCTACATAGTGTATATATATATACTGAACAACATTG 583
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      CTACGTATTAAATATCTATAACGATGGAACGATTATTATCATCACTTTTATGATCACCGC 643
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      GATAGATTTAAGCGATATCCATGAAAGCAACGTCCTTCCTAATTATTGTTTTTATGCCTT 703
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TTCAAGTTAAATCATATTCATATACAAACGGTGAAGTATGATGTTAAGTCAATGCATGCT 763
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TGTTAAAGCATGAATAAAAAACAGTTTTGAGTCGAAGAAAATCATATTAAAGATAAGTAT 823
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TAAATGTTCCTTAAATATTTTATTGTTTGTTTTCGATCGATAAAAACGAAAAATCGCTGA 883
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TGCGTGTATATCGTTTCAAAAACTGATTGATCGACTGGTTGATTCGGATTAGTAAAGCAA 943
consensus_599#1      ------------------------------------------------------------
                                                                                 

consensus_599#0      TATTGTACG 952
consensus_599#1      ---------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)