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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 800 fasta sequence
[ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGAATATAATTTTATCAGATGTT]
[+] EMBL BI506217 [ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATA ]
[+] EMBL BI503955 [ AACAATTTAGCTTCCTTGATGGAACGTCATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAATGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAGCCACATTGCGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAATATTTAGCTTATACTCGCCATGAACCAGTTGGGGTTTGCGGGCAAATTATTCCGTGGAATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTCATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGTAAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGCGCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTTGGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTTGGTGGAAAATCTCCGAATATAATTTTATCAGATGTT]
consensusID : consensus_606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCTTCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAGTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTGATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC]
[+] EMBL BI508035 [AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAGTCGGGAAAAACATTTCCCACGATAAATCCTACAACCGGTGAAACGATTGCCGAAATACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAAATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTTAGCTTCCTTGATGAAGAACAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAGAATTAGTTTCTGGTGGTACAAGGATTGGTGATAAAGGCTATTTTGTTGCACCTACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGAAGAAATTTTTGGACCAGTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCGTGCTAACAATACTGATTACGGATTAGCAGCAGCAGTATTTACGAAAGATATCGATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCACTGTATGGGTAAATGCGTACAATGTTCTCACAC]
consensusID : consensus_606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAATCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG]
[+] EMBL BG101583 [CAAAAAAATTTTTTCAGATNTAATCTTGGACCAAGCTGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGTTCAAGAACTTTTGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACGTGCTAAATCTAGGGTTGTCNGGCAATCCATTTGATTCAAATGTAGAACAAGGTCCACAGATTGATGAAGNACCAAGTAAATAAAATTATGTCCATGATTGAATCAGGCAAAAATGAAGGAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_606#0 ----ACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG 56
consensus_606#1 AGAAACCCAGCAATCCTCTATACAGGAATTTTTATTGACAACGAATGGCATCGATCAAAG 60
consensus_606#2 ----------------------CAAAAAAATTTTTTCAGATNTAAT--CTTGGACCAAGC 36
** ** *** ** * * *** * * ** ***
consensus_606#0 TCGGGAAA-AACATTTCCCACGATAAATCCTACAAC-CGGTGAAACGAT--TGCCGAAAT 112
consensus_606#1 TCGGGAAA-AACATTTCCCACGATAAATCCTACAAC-CGGTGAAACGAT--TGCCGAAAT 116
consensus_606#2 TGTAGAAGCAGCNCNNTTTCGGATTATTTTNACAATATGGGTCAATGGTGNTGCGCCGGT 96
* *** * * *** * * **** ** ** * * *** *
consensus_606#0 ACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAA 172
consensus_606#1 ACAAGAAGGCGATGATGCAGATATCGATCTAGCAGTAAATGCAGCCAATAAAGCTTTTAA 176
consensus_606#2 TCAAGAACTTT-TGTCGAAGATAGTATTTATGATGAATTTGTGGACGGAAGNGCAGNACG 155
****** ** * ***** * * * * ** * * * **
consensus_606#0 ATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGTGGTGTGCTATTGAACAATTT 232
consensus_606#1 ATTAGGATCGCCATGGAGAACTATGGATGCTTCTCAACGAGGTGTGCTATTGAACAATTT 236
consensus_606#2 TGCTAAATC--TAGGGTTGTCNGGCAATCCATTTGATTCAAATGTA-----GAACAAGGT 208
*** * ** * ** * * * * *** ****** *
consensus_606#0 AGCTTCCTTGATGGAACGT-CATCGAGCCTATCTTGCGGCTTTAGAAACTTTAGACAA-- 289
consensus_606#1 AGCTTCCTTGATGAAGAAC-AAGTAAATAAAA-TTATGTCCATGATTGAATCAGGCAAAA 294
consensus_606#2 CCACAGATTGATGAAGNACCAAGTAAATAAAA-TTATGTCCATGATTGAATCAGGCAAAA 267
****** * * * * ** * * * * ** ***
consensus_606#0 -TGGAAAACCTTATTCAGATGCGTATGAATTCGATGTACCTAGCAGTATAG-CCACATTG 347
consensus_606#1 ATGAAGGAGCAGAATTAGTTTCTGGTGG-TACAAGGA--TTGGTGATAAAGGCTATTTTG 351
consensus_606#2 ATGAAGGAGCAG------------------------------------------------ 279
** * * *
consensus_606#0 CGATATTATGCAGGATGGGCTGATAAAAATCACGGGCAAGTTATTCCTATTGATGGAAAA 407
consensus_606#1 TTGCACC-TACAGTATTTGCCAATGTTAAAGATTACATGACAATTGCTAAAGA--AGAAA 408
consensus_606#2 ------------------------------------------------------------
consensus_606#0 TATTTAGCTTATACTCGCCATGAACCAG---TTGGGGTTTGCGGGCAAATTATTCCGTGG 464
consensus_606#1 TTTTTGGACCA-GTTCAACAAATTCTAAAATTTAGCAGTTTGAATGAAGTTATTACGCG- 466
consensus_606#2 ------------------------------------------------------------
consensus_606#0 AATTTTCCTATCTTAATGATGGCTTGGAAATTAGGGCCTGCTCTAGCTACTGGAAACGTC 524
consensus_606#1 -----TGCTAAC--AATACTGA-TTACGGATTAGCAGCAGCAGTATTTACGAAAGATATC 518
consensus_606#2 ------------------------------------------------------------
consensus_606#0 ATAGTATTGAAACCTGCAGAGCAAACATCTTTAACAGCTTTATATATAGCTCAATTATGT 584
consensus_606#1 GATAAAGCAAATTATATTATACAAGGACTTCGAGCTGGCAC-TGTATGGGTAAAT-GCGT 576
consensus_606#2 ------------------------------------------------------------
consensus_606#0 AAAGATGCTGGTTTTCCTCCTGGAGTGATTAATGTTGTTCCTGGTTTTGGTAAAACCGGC 644
consensus_606#1 ACA-ATGTTCTCACAC-------------------------------------------- 591
consensus_606#2 ------------------------------------------------------------
consensus_606#0 GCAGCACTAGTCGCTCATAATTTAGTCGACAAAATAGCATTTACTGGTTCGACTGAAGTT 704
consensus_606#1 ------------------------------------------------------------
consensus_606#2 ------------------------------------------------------------
consensus_606#0 GGAAAATTGATAAAACAAGGTGCTGCAATGAGTAATTTGAAAAGGACTACATTAGAACTT 764
consensus_606#1 ------------------------------------------------------------
consensus_606#2 ------------------------------------------------------------
consensus_606#0 GGTGGAAAATCTCCGAATATAATTTTATCAGATGTT 800
consensus_606#1 ------------------------------------
consensus_606#2 ------------------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |