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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence
[ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCAATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAATTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATTATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGATTGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGAAA]
[+] EMBL BI503037 [ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCAATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAATTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATTATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGNAAGATTGTTAATATCTCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAA ]
[-] EMBL BI509324 [ TCACTACTGAACACTTGATTTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTACAACTGCAGCAATTGCTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGCTGTTGTAGTACCTCCAGAAAGATTGTTAATATCTCTGTCCGTTAAAGGTGCTGGTTCATGGTGAGGATTTTCATGTACAATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACGTAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGGTCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAGAATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCTTTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTTATGGAAA]
consensusID : consensus_607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGATGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATGGGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGTATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT]
[+] EMBL BI516365 [ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGTCAGTGATGGTTATTGTAATTCTAGAATTATTAAATTCAATGCTAAAGGAGAAATAATTTTGCAATGGGGTCGGCATTGGAAAATGGATGGAAACACATATGATTTAACTTATCTTTCATCAAATGTATTCAATATACCTCATGCTTTAGCACTTGCTAGTGAATTGAATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATGGAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCATATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT]
consensusID : consensus_607#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAGTACCTCGGCCGCGACCACNCTANNANNGGA]
[+] EMBL BG101577 [CTGAACACTTGATTCAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATAATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATCTACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAAAAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGCTGTTGTAGTACCTCGGCCGCGACCACNCTANNANNGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_607#0 ATAAATATAATTTTTTTAATAAAATAATAAAACATAAATAGTCAATACAAAAGCTTTTCA 60
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 ATTTTATACAATAAAAAATTAAAAATAAATAAGAATAAAAGAATGATTAAAGATATTAAA 120
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 TTTAAAAAAAATTTTTTTTTTCCTAAGTCCTAATTAAGGAAGTGATATTTTATTATTATT 180
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 ATTATTATATAATAGAATAAAATTAAGTACTTTTGATAGAATCACTACTGAACACTTGAT 240
consensus_607#2 -----------------------------------------------CTGAACACTTGAT 13
consensus_607#1 ------ACGATTTTGTAAACCAACAGCTGTTGCTGTAGAAAGCAATGGTGATTTTTTTGT 54
*** ** *
consensus_607#0 TTCGATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA 300
consensus_607#2 T-CAATAAAATTAATTAACATGCGTGCATAACTATTATTCAACCCAAAATCAGTCAAATA 72
consensus_607#1 --CAGTGATGGTTATTGTAATTCTAGAATTATTAA-ATTCAATGCTAAAGGAG--AAATA 109
* * * * *** ** * * ** * ** ****** * *** ** *****
consensus_607#0 ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC 360
consensus_607#2 ATTATTTTTATTCGACTAGTTTTGAGAATTCAACCGCAGATTCATCATACTGAAACAATC 132
consensus_607#1 ATT-TTGCAATGGGGTCGGCATTGGAAAATGGAT-GGAAACACATA----TGATTTAACT 163
*** ** ** * * *** ** * * * * * *** *** **
consensus_607#0 TACCTCTTTTTTGACATCTTGCTACAA--CTGCAGCAATTGC-TATACAGAGAGCAATAA 417
consensus_607#2 TACCTCTTTTTTGACATCTTGCTAATAACCTGCAGCAATTGCGTATACAGAGAGCAATAA 192
consensus_607#1 TATCTTTCATCAAATGTATT-CAATATACCTCATGCTTTAGCACTTGCT-AGTGAATTGA 221
** ** * * * * ** * * ** ** * ** * * ** * * * *
consensus_607#0 AAATGACTGCTGCTGTAACAAGGGATAAGACTAATGTTGC-TGTTGTAGTACCTCCAGNA 476
consensus_607#2 AAATGACTGCTGCTGTAACAAGGGATAANACTAATGTTGC-TGTTGTAGTACCTCGGCCG 251
consensus_607#1 ATTTACTTTTTCTTGCTGATAGAGAAAACGGTAGAGTTTTATCTTTTTTTGCAACAAATG 281
* * * * ** ** ** ** ** *** * ** * * * *
consensus_607#0 AGATTGTTAATATC-TCTGTCCGTTAAAGNNNCTGGTTCATGGTGAGGATTTTCATGTAC 535
consensus_607#2 CGACCACNC-TANN-ANNGGA--------------------------------------- 270
consensus_607#1 GAACTTTCCATAAGGAATATAAGCATTCAATTATTGGTGAAAGAATATATAGTGTAGCAT 341
* **
consensus_607#0 AATGGAATTTCCAATTTGCATTGACGTATTTATATCCTGGAAAAATTGATAAGCAGTACG 595
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ATGCCAGAGAAAGACTTTATTTGGTTAATGGTCCTGATCCAAAT---------------- 385
consensus_607#0 TAAATTCAATTCTACTACATATATTTCTGAACCATTCTCAGATACAGCTATATCATGTGG 655
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 TCTGTTCATATCTTGCCTTGGACCAAATTGAGATGTGATATTTCCTGAATTTACATCAAG 715
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 AATAAATCCTCGAATGCGTATTTTGTAATTTGGATCAGGACCATTAACCAAATAAAGTCT 775
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 TTCTCTGGCATATGCTACACTATATATTCTTTCACCAATAATTGAATGCTTATATTCCTT 835
consensus_607#2 ------------------------------------------------------------
consensus_607#1 ------------------------------------------------------------
consensus_607#0 ATGGAAA 842
consensus_607#2 -------
consensus_607#1 -------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |