cluster # 628

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Apis mellifera
cluster # 628 cluster # 628 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_628#0 length = 513 sequences # 2

consensus_628#1 length = 508 sequences # 1
consensus_628#2 length = 407 sequences # 1

consensusID : consensus_628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 513
fasta sequence

                              [AAAAAAAAATTAATAAGAATCCTGTGTTGATCCTCCGGTGTTTAAGAAAAAACTATGAGGTTTTTGTAGCGAGATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAGACGATAAGAGGGGAAGGGTGCGAATGGAAGAAAGAGAAGGAAGAAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCGATACTTAAAATGAGACGAGTAAAATAATAATTATTATTATATACACAAAACTATTATTATATTCATATTTTTGCTTATTACATATTTAAGAAAATATTAAACGAGGGCTAGCGAGTATAGTATACATTACTAAAAGA]

[-] EMBL BE844409             [AAAAAAAAATTAATAAGAATCCTGTGTTGATCCTCCGGTGTTTAAGAAAAAACTATGAGGTTTTTGTAGCGAGATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAG AAAAAAAAAAGAGACGATAAGAGGGGAAGGGTGCGAATGGAAGAAAGAGAAGGAAGAAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCG                                                                                                                                         ]
[+] EMBL BI508582             [                                                                        GATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAGACGATAAGAGGGGATGGGTGCGAATGGAAGAAAGAGAAGGAAGAAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCGATACTTAAAATGAGACGAGTAAAATAATAATTATTATTATATACACAAAACTATTATTATATTCATATTTTTGCTTATTACATATTTAAGAAAATATTAAACGAGGGCTAGCGAGTATAGTATACATTACTAAAAGA]




>consensus_628#0
AAAAAAAAATTAATAAGAATCCTGTGTTGATCCTCCGGTGTTTAAGAAAAAACTATGAGG
TTTTTGTAGCGAGATAATTAATTGTGCGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAAT
GAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGC
TTAAAGAATTATTAGTTGATAATGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAA
AAGAAAAAAAAAAAGAGACGATAAGAGGGGAAGGGTGCGAATGGAAGAAAGAGAAGGAAG
AAAGAGAATAACAAATTCTTACACTCTTTTAATCATTGTTAATTAATTAATTAATTAATT
AATCACGATCCTATCGATACTTAAAATGAGACGAGTAAAATAATAATTATTATTATATAC
ACAAAACTATTATTATATTCATATTTTTGCTTATTACATATTTAAGAAAATATTAAACGA
GGGCTAGCGAGTATAGTATACATTACTAAAAGA

consensusID : consensus_628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAGAAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGAGAGAAAGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGCGTGTGTGTGTGTGTGTGTCAGGAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGATTCGAGAAAGGACTGAGACTGAGAAAGAAAGAGAACCAAGGTCGAAGAGGTACAGAGAACACTAAGAGATAGAGGTAGACGA]

[+] EMBL BI507161             [TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAGAAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGAGAGAAAGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGCGTGTGTGTGTGTGTGTGTCAGGAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGATTCGAGAAAGGACTGAGACTGAGAAAGAAAGAGAACCAAGGTCGAAGAGGTACAGAGAACACTAAGAGATAGAGGTAGACGA]




>consensus_628#1
TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAG
AAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGT
CAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTT
GTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCCTG
GAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGAGAGAAA
GAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGC
TTGCGTGCGTGCGTGTGTGTGTGTGTGTGTCAGGAAGAGAAAGAGAGAGAGAGAGAGAAA
GAGAGATTCGAGAAAGGACTGAGACTGAGAAAGAAAGAGAACCAAGGTCGAAGAGGTACA
GAGAACACTAAGAGATAGAGGTAGACGA

consensusID : consensus_628#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence

                              [GAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGAGAGAAGGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGTGTGTGTGTGTGTGTCNNNNAGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGT]

[+] EMBL BI503657             [GAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGAATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGACAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTCTGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGAGAGAAGGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGTGTGTGTGTGTGTGTCNNNNAGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTCAATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGT]




>consensus_628#2
GAGAAGGCAAAGGATCGAACGTGGTTAAAGGCGATCGTAAAACGCGTCAGCTGTGGGCGA
ATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATTTTGTCCCTCCAGGGA
CAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTCTGGAACGCACAACAA
GAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGAGAGAAGGAGAGTGTGTGCT
TGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGCGCTTGCGTGCGTGTGTGTGTGTG
TGTGTCNNNNAGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGAGTC
AATTCCAACGAGCATTTTCATGCCATTAAGCTTAAAGAATTATTAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_628#1      TAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGCGGAAG 60
consensus_628#2      ------------------------------------------------------------
consensus_628#0      ----------------------------------AAAAAAAAATTAATAAGAATCCTGTG 26
                                                                                 

consensus_628#1      AAGAGAGACGAACGAGAAGGCAAAGGATCGAACGTGGTTAAAG-GCGATCGTAAAACGCG 119
consensus_628#2      -------------GAGAAGGCAAAGGATCGAACGTGGTTAAAG-GCGATCGTAAAACGCG 46
consensus_628#0      TTGATCCTCCGGTGTTTAAGAAAAAACTATGAGGTTTTTGTAGCGAGATAATTAATTGTG 86
                                  *   * * ***   *   * **  **  ** * ***  * **  * *

consensus_628#1      TCAGCTGTGGGCGA-ATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATT 178
consensus_628#2      TCAGCTGTGGGCGA-ATCTCTTTTTAAGTTCTCTCTGTACTGTGTGACCCTTACATTATT 105
consensus_628#0      CGGAGCGCGAATGGGAGAAAGAGAGAAAAGAAATGAATTATGATAAAACTGTACACACGA 146
                           * *   *  *         **      *   *  **    * *  ****     

consensus_628#1      TTGTCCCTCCAGGGACAGGTTCAGTGTTGTAACTTAGGATATAAGAAGAATAAGAGCTCC 238
consensus_628#2      TTGTCCCTCCAGGGACAGGTTCAGTGTTGTAATTTAGGATATAAGAAGAATAAGAGCTTC 165
consensus_628#0      GTCAATTCCAACGAGCATTTTCA----TGCCATTAAGCTTAAAGAATTATTAGTTGATAA 202
                      *      * * *  **  ****    **  * * **  ** *  *  * **   * *  

consensus_628#1      TGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGAACGA---- 294
consensus_628#2      TGGAACGCACAACAAGAAAGAAAATTAATAAAAGGGAAGAGTTGAAGAAAGGACGA---- 221
consensus_628#0      TGAGAAACAAAACAAAGAAAAAGAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAGACGAT 262
                     **  *  ** *****  ** ** *  ** ****   ** **   ** ***    **    

consensus_628#1      GAGAAAGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGA 354
consensus_628#2      GAGAAGGAGAGTGTGTGCTTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAG----- 276
consensus_628#0      AAGAGGGGAAGGGTGCGAATGGAAGAAAGAG-AAGGAAGAAAGAGAATAACAAATTCTTA 321
                      ***  *  ** *** *  **  *** ****  **  *** *****   * * *      

consensus_628#1      GAGCGCTTGCGTGCGTGCGTGTGTGTGTGT------GTGTGTCAGGAAG----------- 397
consensus_628#2      ---CGCTTGCGTGCGTGTGTGTGTGTGTGT------GTCNNNNAGAGAA----------- 316
consensus_628#0      CACTCTTTTAATCATTGTTAATTAATTAATTAATTAATTAATCACGATCCTATCGATACT 381
                           **   *   **    *   *   *       *     *                

consensus_628#1      -AGAAAGAGAGAGAGAGAGAGAAAGAGAG-ATTCGAGAAAGGACTGAGACTGAGAAAGAA 455
consensus_628#2      -AGAGAGAAAAGAAATGAATTATGATAAA-ACTGTACACACGAGTCAATTCCAACGAGCA 374
consensus_628#0      TAAAATGAGACGAGTAAAATAATAATTATTATTATATACACAAAACTATTATTATATTCA 441
                      * *  ** *       *   *     *  * *  * * *  *                *

consensus_628#1      AGAGAACCAAGGTCGAAGAGGTACAGAGAACACTAAGAGATAGAGGTAGACGA------- 508
consensus_628#2      TT----TTCATGCCATTAAGCTTAAAGAATTATTAGT----------------------- 407
consensus_628#0      TATTTTTGCTTATTACATA-TTTAAGAAAATATTAAACGAGGGCTAGCGAGTATAGTATA 500
                                       *  *  *   *  * **                         

consensus_628#1      -------------
consensus_628#2      -------------
consensus_628#0      CATTACTAAAAGA 513

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)