cluster # 633

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Apis mellifera
cluster # 633 cluster # 633 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_633#0 length = 727 sequences # 2

consensus_633#1 length = 662 sequences # 1
consensus_633#2 length = 519 sequences # 1

consensusID : consensus_633#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 727
fasta sequence

                              [GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAATGCATCTACGAAAACGATAAGGAGCTCTACTTAGCTCCGTGAACTTCCAATAGCGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTATACACATTGTTACAAGGATCGAGAAACAGCTATGATGGTGTATAGAAATACTGGAAGGGCGAAACAACGTATGTAGAAGAGTCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCAATGTTTCGATTTTTGGGAAACTTTATCTTGAAATTTCCACGCAACGCAAAATTCGGTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATTGATTATAAATATTACATTGTATTAATCTATCGTAACATTTCCTTCC--CGA-A-TTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCACGAAAAA]

[+] EMBL AF339140             [GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAATGCATCTACGAAAACGATAAGGAGCTCTACTTAGCTCCGTGAACTTCCAATAGCGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTATACACATTGTTACAAGGATCGAGAAACAGCTATGATGGTGTATAGAAATACTGGAAGGGCGAAACAACGTATGTAGAAGAGTCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCAAT     GATTTTTGCAAAACTTTATCTTGAAATTTCCACGCAACGCAAAATTCGGTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATT ATTATAAATATTACATTGTATTAATCTATCGTAACATTTCCTTCCTTCGATATTTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCCCGAAAAA]
[+] EMBL BE844389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGAAATACTGGAAGAGCGAAACAACGTATGTAGAAGAATCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCTTTGTTTCGATTTTTGGGAAACTTTATCTTAAAATTTCCACGCAACGCAAAATTCGTTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATTGATTATAAATATTACATTGTATTAATCTATCGTAACATTTCCTTCC        TTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCACGCAA  ]




>consensus_633#0
GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAA
AGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTA
CATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTT
TTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGT
AGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATT
TGGCAAATGCATCTACGAAAACGATAAGGAGCTCTACTTAGCTCCGTGAACTTCCAATAG
CGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTATACACATTGTTACAAGGATCGAG
AAACAGCTATGATGGTGTATAGAAATACTGGAAGGGCGAAACAACGTATGTAGAAGAGTC
TAAAAAGAAAATCTCACGAACGATTTTATTTTATTCGATAATATTCTCGATCAATGTTTC
GATTTTTGGGAAACTTTATCTTGAAATTTCCACGCAACGCAAAATTCGGTTTATCTAAGA
AATTAATTCCGACGAATTATTTAAAATTGATTATAAATATTACATTGTATTAATCTATCG
TAACATTTCCTTCCCGAATTCTATTACCTTGTAATCTTCCGCTATTATACTTGTTTATCA
CGAAAAA

consensusID : consensus_633#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGGTGATTTTTAAATACGATTACGCCGAAAATAATACTTTGGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCCAAGAGAAATTTCTACACGCCTGCGCTTCGCCGTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAGGA]

[+] EMBL BE844326             [TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGGTGATTTTTAAATACGATTACGCCGAAAATAATACTTTGGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCCAAGAGAAATTTCTACACGCCTGCGCTTCGCCGTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAGGA]




>consensus_633#1
TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGG
CTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATG
AGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGC
AGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCG
CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA
AACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA
TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG
GGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGGTGATT
TTTAAATACGATTACGCCGAAAATAATACTTTGGCTCTATTTAGCGCCATGAACGATCTT
TCGATGGAGAGCTCGCGATATTATCGAGGAAGCCAAGAGAAATTTCTACACGCCTGCGCT
TCGCCGTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAG
GA

consensusID : consensus_633#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [ACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTTCTAGACGGCCAATTCAGGGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCTTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCAAGAGAAATTTCT]

[+] EMBL AF393496             [ACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAGCTTCTAGACGGCCAATTCAGGGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCTTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAGCTCTATTTAGCGCCATGAACGATCTTTCGATGGAGAGCTCGCGATATTATCGAGGAAGCAAGAGAAATTTCT]




>consensus_633#2
ACACGTTCGAAAGAAGGAAACGGAATGAAGGGGCTCGGCGTCTCCCTGCTGGTTGCGTTG
CTGCTCGTCCTATTAGCGATCGAGGATACCATGAGCAAAAAGATGACGATCGAGGAAGCG
AAGAAAACTATCAAGAATCTGAGGAAAGTTTGCAGCAAGAAGAACGACACCCCCAAAGAG
CTTCTAGACGGCCAATTCAGGGGCGAATTCCCGCAGGACGAGAGGCTAATGTGCTACATG
AAATGCATCATGATCGCGACTAAAGCGATGAAAAACGACGTTATCCTGTGGGATTTTTTC
GTGAAGAATGCTCGCATGATATTGCTCGAGGAATACATTCCGCGCGTTGAGAGCGTAGTT
GAAACGTGCAAGAAGGAAGTGACATCTACGGAGGGATGCGAGGTTGCTTGGCAATTTGGC
AAGTGCATCTACGAAAACGACAAGGAGCTCTATTTAGCGCCATGAACGATCTTTCGATGG
AGAGCTCGCGATATTATCGAGGAAGCAAGAGAAATTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_633#1      TGTCCGCGTTAGACATTGCCAAGTTAGACACGTTCGAAAGAAGGAAACGGAATGAAGGGG 60
consensus_633#2      ---------------------------ACACGTTCGAAAGAAGGAAACGGAATGAAGGGG 33
consensus_633#0      ------------------------------------------------------------
                                                                                 

consensus_633#1      CTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATG 120
consensus_633#2      CTCGGCGTCTCCCTGCTGGTTGCGTTGCTGCTCGTCCTATTAGCGATCGAGGATACCATG 93
consensus_633#0      ------------------------------------------------------------
                                                                                 

consensus_633#1      AGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATTTGAGGAAAGTTTGC 180
consensus_633#2      AGCAAAAAGATGACGATCGAGGAAGCGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGC 153
consensus_633#0      -----------------------GTTGAAGAAAACTATCAAGAATCTGAGGAAAGTTTGC 37
                                               ******************* **************

consensus_633#1      AGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCG 240
consensus_633#2      AGCAAGAAGAACGACACCCCCAAAGAGCTTCTAGACGGCCAATTCAGGGGCGAATTCCCG 213
consensus_633#0      AGCAAGAAGAACGACACCCCCAAAGAGCTCCTGGACGGCCAATTCAGAGGCGAATTCCCG 97
                     ***************************** ** ************** ************

consensus_633#1      CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA 300
consensus_633#2      CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA 273
consensus_633#0      CAGGACGAGAGGCTAATGTGCTACATGAAATGCATCATGATCGCGACTAAAGCGATGAAA 157
                     ************************************************************

consensus_633#1      AACGACGTTATCTTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA 360
consensus_633#2      AACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA 333
consensus_633#0      AACGACGTTATCCTGTGGGATTTTTTCGTGAAGAATGCTCGCATGATATTGCTCGAGGAA 217
                     ************ ***********************************************

consensus_633#1      TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG 420
consensus_633#2      TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG 393
consensus_633#0      TACATTCCGCGCGTTGAGAGCGTAGTTGAAACGTGCAAGAAGGAAGTGACATCTACGGAG 277
                     ************************************************************

consensus_633#1      GGATGCGAGGTTGCGTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAG------ 474
consensus_633#2      GGATGCGAGGTTGCTTGGCAATTTGGCAAGTGCATCTACGAAAACGACAAGGAG------ 447
consensus_633#0      GGATGCGAGGTTGCGTGGCAATTTGGCAAATGCATCTACGAAAACGATAAGGAGCTCTAC 337
                     ************** ************** ***************** ******      

consensus_633#1      --------GTGATTTTTAAATACGATTACGC---------CGAAAATAATACTTTGGCTC 517
consensus_633#2      ---------------------------------------------------------CTC 450
consensus_633#0      TTAGCTCCGTGAACTTCCAATAGCGAAACGATCGAAGAAGCAAAAGAAATTTCACACCTA 397
                                                                              ** 

consensus_633#1      TATTTAGCGCCATGA-------------------ACGATCTTTCGA-----TGGAGAGCT 553
consensus_633#2      TATTTAGCGCCATGA-------------------ACGATCTTTCGA-----TGGAGAGCT 486
consensus_633#0      TACACATTGTTACAAGGATCGAGAAACAGCTATGATGGTGTATAGAAATACTGGAAGGGC 457
                     **   *  *  *  *                   * * * * * **     ****  *  

consensus_633#1      CG--CGATAT-TATCGAGGAAGCC-AAGAGAAATTTCTAC--ACGCCTGCGCTTCGCC-- 605
consensus_633#2      CG--CGATAT-TATCGAGGAAGC--AAGAGAAATTTCT---------------------- 519
consensus_633#0      GAAACAACGTATGTAGAAGAGTCTAAAAAGAAAATCTCACGAACGATTTTATTTTATTCG 517
                         * *  * * * ** **  *  ** ***** *                         

consensus_633#1      GTTATCTTGGCCATCACGTTCGTAACCGTGGAAAAGCAGTGTGCAGAAATACCAGGA--- 662
consensus_633#2      ------------------------------------------------------------
consensus_633#0      ATAATATTCTCGATCAATGTTTCGATTTTTGGGAAACTTTATCTTGAAATTTCCACGCAA 577
                                                                                 

consensus_633#1      ------------------------------------------------------------
consensus_633#2      ------------------------------------------------------------
consensus_633#0      CGCAAAATTCGGTTTATCTAAGAAATTAATTCCGACGAATTATTTAAAATTGATTATAAA 637
                                                                                 

consensus_633#1      ------------------------------------------------------------
consensus_633#2      ------------------------------------------------------------
consensus_633#0      TATTACATTGTATTAATCTATCGTAACATTTCCTTCCCGAATTCTATTACCTTGTAATCT 697
                                                                                 

consensus_633#1      ------------------------------
consensus_633#2      ------------------------------
consensus_633#0      TCCGCTATTATACTTGTTTATCACGAAAAA 727

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)