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Apis mellifera
cluster # 634 cluster # 634       Sequences # 4       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_634#0 length = 660 sequences # 3  
 consensus_634#1 length = 216 sequences # 1  
consensusID : consensus_634#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 660
fasta sequence 
                              [GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAAGGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTGTAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACCAGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAAAAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATTAAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATATNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAGTACATTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCGTGAAAAACGGGTCGT]

[+] EMBL BI515580             [GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAAGGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTGTAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACCAGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCT                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI514304             [                                                                                                                                                                                   CAGTTGCGACTAACGATCGTTTCNGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAAAAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATTAAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATATNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAA                                                                                          ]
[+] EMBL BE844300             [                                                                                                                                                                                                       TTCAGTTATGATGTATCATTGTTTAAGGGTCGATGTAACAAGGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAAAAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATTAAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATATGTATTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAGTACATTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCGTGAAAAACGGGTCGT]




>consensus_634#0
GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAA
GGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTG
TAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACC
AGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAA
GGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAA
AAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATT
AAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATA
TNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCAC
CCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAAC
AGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAG
TACATTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCGTGAAAAACGGGTCGT

consensusID : consensus_634#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence 
                              [ACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAGTCGAGGGACGTAACGTAGGACAGTACATGAAAGAAAATGCAAATTTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCG]

[+] EMBL BI513067             [ACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAGTCGAGGGACGTAACGTAGGACAGTACATGAAAGAAAATGCAAATTTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACTCG]




>consensus_634#1
ACATTTTATTTGCGTCTATAAATCTGGAGCGCACCCTATACATATGTTTACGTACATATC
TTTTTGTTATGAACATATCTTCGCTGATTTTAACAGCTATAATCTCAGGCGTGAATTGGA
GGAAACGGAAGTCGAGGGACGTAACGTAGGACAGTACATGAAAGAAAATGCAAATTTCTT
CGAACGAATCGAATCTTCCGATTTCTCTACTACTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_634#0      GCCATGACGTTACAGCTTACATTAAGTCTAGATATAAAAAAAAAAAAAAAAAAAATGGAA 60
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      GGAAATAGGAATGCTAATAAGAATCCAGTTGGAAAAAACAGACAATACTTATTACTATTG 120
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      TAATTCAGTAGAACGAGAGTCGAGATAATCGAGCACGTAGCGAGGGGCATTAATCCAACC 180
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      AGTTGCGACTAACGATCGTTTCAGTTATGATGTATCATTGTTCAAGGGTCGATGTAACAA 240
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      GGTTATAGATGCAAATCGAGTTAATGATTTTTTAAAAATATTTTTTATTTCTTTTAGAAA 300
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      AAGAAATTAAATTTTTTAAATTAATAGACATCGGGATATTTTATCGTTTGTTTATTAATT 360
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      AAATAATATATAAAATTATACAAAATATTTTAACTTATATACATCGTATATATATATATA 420
consensus_634#1      ------------------------------------------------------------
                                                                                 

consensus_634#0      TNNNTTTAAAATTTGATATTTTTTAAACATTTTATTTGCGTCTATAAATCTGGAGCGCAC 480
consensus_634#1      --------------------------ACATTTTATTTGCGTCTATAAATCTGGAGCGCAC 34
                                               **********************************

consensus_634#0      CCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAAC 540
consensus_634#1      CCTATACATATGTTTACGTACATATCTTTTTGTTATGAACATATCTTCGCTGATTTTAAC 94
                     ************************************************************

consensus_634#0      AGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAATCGAGGGACGTAACGTAGGACAG 600
consensus_634#1      AGCTATAATCTCAGGCGTGAATTGGAGGAAACGGAAGTCGAGGGACGTAACGTAGGACAG 154
                     ************************************ ***********************

consensus_634#0      TACAT-----------------TCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACT 643
consensus_634#1      TACATGAAAGAAAATGCAAATTTCTTCGAACGAATCGAATCTTCCGATTTCTCTACTACT 214
                     *****                 **************************************

consensus_634#0      CGTGAAAAACGGGTCGT 660
consensus_634#1      CG--------------- 216
                     **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)