Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 743 cluster # 743       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_743#0 length = 583 sequences # 2  
 consensus_743#1 length = 218 sequences # 1  
consensusID : consensus_743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 583
fasta sequence 
                              [CACAAATGAAATATCGTATTCTTATAACATTGCAACATGCGAGCAAAATGATAAAAAGAGTGCTTGGTCGCCAATATGGCGGGGTTTCGACCGCAATTAATTCATTCCCAATTCTCCGTTACATTGAAACGAACAATCGAATTCGATTAAGTGAAAATTAAATTTCCTAACGGAGGTCCACACTCGTTACGTTATCCTCGTTTCATACCGCCGTTTAAATATCCATCCAACGATTTTACTACGCTTTAGAATTTTCAATAACGAGTGTGCACCCTCATCTTAATCCTTAACTGCCATTGCAAGATCATCAAAGGACGTAATAAAAAACATAATTTTTTTTTTTTCTTTCAATGGCATTAAGCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATTATATATTTCGATTTCACCATAACAGTTAAGGATTGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAAGATTATCAAAGAAACAGGGAGGATAATAAAATAGTAAGAAAGCACGGTCTGGATGAAACAAGCATCGCACATTTATTCGAGAAGCATGGAAAAGAA]

[+] EMBL BI504403             [CACAAATGAAATATCGTATTCTTATAACATTGCAACATGCGAGCAAAATGATAAAAAGAGTGCTTGGTCGCCAATATGGCGGGGTTTCGACCGCAATTAATTCATTCCCAATTCTCCGTTACATTGAAACGAACAATCGAATTCGATTAAGTGAAAATTAAATTTCCTAACGGAGGTCCACACTCGTTACGTTATCCTCGTTTCATACCGCCGTTTAAATATCCATCCAACGATTTTACTACGCTTTAGAATTTTCAATAACGAGTGTGCACCCTCATCTTAATCCTTAACTGCCATTGCAAGATCATCAAAGGACGTAATAAAAAACATAATTTTTTTTTTTTCTTTCAATGGCATTAAGCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATTATATATTTCGATTTCACCATAACAGTTAAGGATTGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAAGATTATCAAAGAAACAGGGAGGATAATAAAATAGTAAGAAAGCACGGTCTGGATGAAACAAGCATCGCACATTTATTCGAGAAGCATGGAAAAGAA]
[+] EMBL BI504577             [CACAAATGAAATATCGTATTCTTATAACATTGCAACATGCGAGCAAAATGATAAAAAGAGTGCTTGGTCGCCAATATGGCGGGGTTTCGACCGCAATTAATTCATTCCCAATTCTCCGTTACATTGAAACGAACAATCGAATTCGATTAAGTGAAAATTAAATTTCCTAACGGAGGTCCACACTCGTTACGTTATCCTCGTTTCATACCGCCGTTTAAATATCCATCCAACGATTTTACTACGCTTTAGAATTTTCAATAACGAGTGTGCACCCTCATCTTAATCCTTAACTGCCATTGCAAGATCATCAAAGGACGTAATAAAAAACATAATTTTTTTTTTTTCTTTCAATGGCATTAAGCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATTATATATTTCGATTTCACCATAACAGTTAAGGATTGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAAGATTATCAAAGAAACAGGGAGGATAATAAAATAGTAAGAAAGCACGGTCTGGATGAAACAAGCATCGCACATTTATT                   ]




>consensus_743#0
CACAAATGAAATATCGTATTCTTATAACATTGCAACATGCGAGCAAAATGATAAAAAGAG
TGCTTGGTCGCCAATATGGCGGGGTTTCGACCGCAATTAATTCATTCCCAATTCTCCGTT
ACATTGAAACGAACAATCGAATTCGATTAAGTGAAAATTAAATTTCCTAACGGAGGTCCA
CACTCGTTACGTTATCCTCGTTTCATACCGCCGTTTAAATATCCATCCAACGATTTTACT
ACGCTTTAGAATTTTCAATAACGAGTGTGCACCCTCATCTTAATCCTTAACTGCCATTGC
AAGATCATCAAAGGACGTAATAAAAAACATAATTTTTTTTTTTTCTTTCAATGGCATTAA
GCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATT
ATATATTTCGATTTCACCATAACAGTTAAGGATTGAGAGAAAGAGAGAGAGAGAAAGAGA
GAGAAAAGATTATCAAAGAAACAGGGAGGATAATAAAATAGTAAGAAAGCACGGTCTGGA
TGAAACAAGCATCGCACATTTATTCGAGAAGCATGGAAAAGAA

consensusID : consensus_743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence 
                              [TTTTTTTTCTTTCAATGGCATTAAGCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATTATATATTTCGATTTCACCATAACAGTTAAGGATGGAGAGAATGCGCGCGAGTGAAAGGGACAGAGAGGGTGGCGGAGAAACGATGGAGAAGGGGAGGTCAGTTCTCTTCATCGGATTTAATGTAAAGCTCGGCC]

[-] EMBL BI504511             [TTTTTTTTCTTTCAATGGCATTAAGCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATTATATATTTCGATTTCACCATAACAGTTAAGGATGGAGAGAATGCGCGCGAGTGAAAGGGACAGAGAGGGTGGCGGAGAAACGATGGAGAAGGGGAGGTCAGTTCTCTTCATCGGATTTAATGTAAAGCTCGGCC]




>consensus_743#1
TTTTTTTTCTTTCAATGGCATTAAGCATTTTAATTATCTTTATTTTGATCAAAAATTCCA
GAAATATAGCAAAAATATTCTATTATATATTTCGATTTCACCATAACAGTTAAGGATGGA
GAGAATGCGCGCGAGTGAAAGGGACAGAGAGGGTGGCGGAGAAACGATGGAGAAGGGGAG
GTCAGTTCTCTTCATCGGATTTAATGTAAAGCTCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_743#0      CACAAATGAAATATCGTATTCTTATAACATTGCAACATGCGAGCAAAATGATAAAAAGAG 60
consensus_743#1      ------------------------------------------------------------
                                                                                 

consensus_743#0      TGCTTGGTCGCCAATATGGCGGGGTTTCGACCGCAATTAATTCATTCCCAATTCTCCGTT 120
consensus_743#1      ------------------------------------------------------------
                                                                                 

consensus_743#0      ACATTGAAACGAACAATCGAATTCGATTAAGTGAAAATTAAATTTCCTAACGGAGGTCCA 180
consensus_743#1      ------------------------------------------------------------
                                                                                 

consensus_743#0      CACTCGTTACGTTATCCTCGTTTCATACCGCCGTTTAAATATCCATCCAACGATTTTACT 240
consensus_743#1      ------------------------------------------------------------
                                                                                 

consensus_743#0      ACGCTTTAGAATTTTCAATAACGAGTGTGCACCCTCATCTTAATCCTTAACTGCCATTGC 300
consensus_743#1      ------------------------------------------------------------
                                                                                 

consensus_743#0      AAGATCATCAAAGGACGTAATAAAAAACATAATTTTTTTTTTTTCTTTCAATGGCATTAA 360
consensus_743#1      ------------------------------------TTTTTTTTCTTTCAATGGCATTAA 24
                                                         ************************

consensus_743#0      GCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATT 420
consensus_743#1      GCATTTTAATTATCTTTATTTTGATCAAAAATTCCAGAAATATAGCAAAAATATTCTATT 84
                     ************************************************************

consensus_743#0      ATATATTTCGATTTCACCATAACAGTTAAGGATTGAGAGAAAGAGAGAGAGAGAAAGAGA 480
consensus_743#1      ATATATTTCGATTTCACCATAACAGTTAAGGATGGAGAGAATGCGCGCGAGTGAAAGGGA 144
                     ********************************* ******* * * * *** ***** **

consensus_743#0      GAGAAAAGATTATCAAAGAAACAGGGAGGATAATAAAATAGTAAGAAAGCACGGTCTGGA 540
consensus_743#1      CAGAGAGGGTGGCGGAGAAACGATGGAGAAGGGGAGGTCAGTTCTCTTCATCGGATTTAA 204
                      *** * * *     *  **  * **** *    *    ***         ***  *  *

consensus_743#0      TGAAACAAGCATCGCACATTTATTCGAGAAGCATGGAAAAGAA 583
consensus_743#1      TGTA--AAGCTCGGCC--------------------------- 218
                     ** *  ****   **


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)